Protein

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Genbank accession
YP_013435397.1 [GenBank]
Protein name
central straight fiber
RBP type
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MGIHLMISNNAPAKMVLNSIMTGYTMAYVQHSIYTDYDVIGRSFWLKIGESIDRRDYTGIDTFFVMINNLTPSTSYEIQGAFYDSIIDSELLEAKIGINLSNETNFRTKEKPIITAARSESEPVDVGVGAPIVVVETAGEASYCTIELKSTASEDSEWVKYYIGALGPTIKFGGVPVGNYKIRISGQVTMPDGVTVDSSGYYEYPSVFTVAYNFVPPTAPTNIDFKAARIADGKERYDVRIEWDWERGGGANVREFLVTYINSEEYAKTGWAKAQKINVGAARAATIISFPWKVEHTFKVSSIAWGPNKQDITESAPVTFILNEDTPLDNSFVNETGIDVNYAFIKGSMKDGEIWRQTFLIDAATGAINIGLLDEEGKAPISFDPINRVVNVDGKVITRDINAANFIMTNLSGKDNPAIYTQGKSWGDNNSGIWMGMDNTSAKAKLDIGNATQWIRYDGTTLRISSGVVIGTPNGDVDIETGLQGKQTVFVYKLATSLPAKPLEQDYPPPGWSKTPPNRTDMTQNIYATTGTLDPVTNKLLEGTSWSDVVQWSGTEGTIGHDGQRGPGMYSIGIAGLGGWDDGQANSFFQSNFGSPPVKYDVLTEFNSNAPQSAFTRQWNGSGWVNPAMVLHGNMIVNGTVTADKIVAGNAFLSQIGVNIIYDRNAALSGNPEAYYKMKIDLNSGYIHIR
Physico‐chemical
properties
protein length:690 AA
molecular weight: 75412,72790 Da
isoelectric point:4,88278
aromaticity:0,10435
hydropathy:-0,23971

Domains

Domains [InterPro]
IPR057550
STR
15–102
IPR057550 IPR057551 IPR057552 IPR057549
IPR057551
STR
108–202
IPR057551
YP_013435397.1
1 690
Architecture
STR
STR
STR
STR
STR 15-102 | STR 108-202 | STR 216-340 | STR 355-669 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_013435397.1
1 690
Domain Start End Length (AA) Confidence
N-terminal 1 413 413 0,8474
Central domain 414 644 232 0,1670
C-terminal 645 690 45 0,7415
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-413
Central
414-644
C-terminal
645-690

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage IrisVonRoten
[NCBI] 		2852004 Uroviricota > Caudoviricetes > Demerecviridae > Tequintavirus > Tequintavirus irisvonroten
Host Escherichia coli K-12
[NCBI] 		83333 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Escherichia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_013435397.1 [NCBI]
Genbank nucleotide accession
NC_130053 [NCBI]
CDS location
range 19851 -> 21923
strand +
CDS
GTGGGCATCCATTTAATGATTTCGAATAATGCACCAGCCAAAATGGTCTTAAATAGTATAATGACTGGATATACAATGGCGTATGTCCAGCACTCCATTTATACTGATTATGATGTTATTGGTAGATCTTTTTGGTTAAAAATAGGAGAAAGTATAGATAGACGTGATTACACCGGTATAGATACTTTCTTCGTAATGATTAATAATTTAACCCCCTCTACCTCCTATGAGATTCAGGGGGCTTTCTATGACTCAATTATTGACTCAGAGTTACTAGAAGCTAAGATTGGTATCAACCTCTCTAATGAAACTAACTTTAGAACAAAGGAAAAGCCAATAATTACTGCAGCAAGATCTGAATCAGAACCCGTTGACGTTGGTGTTGGTGCTCCAATAGTTGTTGTAGAGACTGCTGGTGAGGCTAGTTACTGCACTATTGAATTAAAAAGTACTGCATCAGAAGATAGTGAATGGGTTAAATATTACATAGGAGCACTGGGACCTACTATCAAATTTGGTGGTGTTCCTGTTGGCAACTATAAGATCAGAATATCTGGTCAAGTTACTATGCCAGATGGTGTTACAGTTGACTCATCTGGCTATTATGAATATCCTAGCGTTTTCACTGTAGCTTATAATTTCGTACCACCTACTGCACCTACTAACATTGACTTTAAAGCTGCACGAATCGCAGACGGTAAGGAACGATATGATGTTAGAATAGAGTGGGACTGGGAACGTGGTGGTGGTGCTAATGTTCGTGAGTTCTTGGTTACATATATAAATTCTGAAGAATACGCTAAGACTGGCTGGGCTAAAGCTCAAAAGATAAACGTTGGTGCTGCTAGAGCTGCAACAATTATATCATTCCCATGGAAAGTTGAACATACTTTTAAGGTATCATCAATTGCCTGGGGACCAAATAAACAAGATATAACAGAATCAGCTCCTGTAACATTTATATTGAATGAAGATACTCCTCTAGATAACAGCTTTGTCAATGAGACGGGTATTGATGTTAACTATGCCTTTATTAAGGGCAGCATGAAAGATGGAGAAATCTGGAGACAGACATTCTTAATCGATGCAGCTACTGGTGCTATTAACATTGGTCTGCTAGATGAAGAAGGAAAAGCACCTATTTCTTTTGATCCTATAAACCGTGTTGTTAACGTTGATGGTAAAGTAATTACTAGAGATATTAATGCTGCGAACTTTATCATGACTAACTTATCTGGTAAGGATAATCCAGCAATTTACACTCAAGGTAAATCTTGGGGGGATAATAACTCAGGTATTTGGATGGGTATGGATAATACCTCTGCCAAAGCTAAACTAGACATTGGTAACGCTACACAATGGATACGTTATGATGGTACTACTTTGCGTATCTCTAGTGGTGTAGTAATTGGGACACCAAATGGTGACGTAGATATTGAGACTGGTTTACAAGGTAAACAGACAGTATTTGTTTATAAGTTAGCAACATCTCTACCTGCTAAACCACTAGAACAAGATTATCCACCTCCTGGTTGGTCAAAAACTCCACCTAACCGTACAGATATGACACAAAATATCTATGCGACTACGGGTACGCTTGATCCAGTTACTAACAAACTTCTTGAAGGTACTAGCTGGTCTGATGTAGTTCAGTGGAGTGGTACTGAAGGTACTATAGGACATGATGGACAACGTGGTCCTGGAATGTACTCCATAGGTATAGCAGGTTTAGGTGGTTGGGATGATGGACAAGCTAATTCCTTCTTTCAAAGTAACTTCGGTTCTCCCCCAGTTAAATATGATGTATTAACTGAATTTAATAGTAATGCACCACAATCAGCATTTACAAGGCAATGGAATGGGTCTGGTTGGGTTAACCCTGCAATGGTTCTCCACGGAAACATGATTGTTAATGGGACGGTGACGGCAGATAAAATTGTAGCAGGAAATGCTTTCTTATCTCAGATCGGTGTTAACATCATTTATGATAGGAACGCTGCGTTATCAGGAAACCCTGAGGCATACTACAAGATGAAGATAGACCTAAATAGTGGGTATATCCATATAAGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
77b9f9ca7046e7575ab40b8ab30b7accaf9d2cbff7a988947bb709d280efb83a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7932
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Systematic exploration of Escherichia coli phage-host interactions with the BASEL phage collection Maffei,E., Shaidullina,A., Burkolter,M., Heyer,Y., Estermann,F., Druelle,V., Sauer,P., Willi,L., Michaelis,S., Hilbi,H., Thaler,D.S. and Harms,A. 2021 — GenBank