Protein

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UniProt accession
A0A649V2M7 [UniProt]
Protein name
Rhamnogalacturonase A/B/Epimerase-like pectate lyase domain-containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MVYSKHEWQSGELITSSKLNNIENCIYHSTLYNNVKEFGATGDGVTDDSSAFQKAIDAAYANFTNLANKETITGSFEVDVPSGVYEISSTLVLPPMVKLKAIGFVQLKYNGKSGTPCIWVKQKDDVSKYSDSIVYKQGYTRGNIIDGGSGGLMILRDGPKDCIGLAVGNNTDLGGNFPVSRYSMQGVMITGFDEGIHWYAIHHYIGNYYSFHLEGNNTNLMVGDDDIALNDSNENFSFYSSVFAAAKMAVYTKTAWDINFFGCSFDFNTVVFKDSSDWGKINLVGCHLENNYHGILQKKLSNYTYTLTLKQCRILLSGNKLFEGKGNVTIRDCNFIEQSFQTIDSLADDTIYLEESNSVYQDKEVIFKLIETLSKDGNMINSDVSAFLQYGETNANPLSKTTYNGKPALLVSSSGTSFSASIGLGVLEDVLPFKHTIHAAIKYVCNHSSDDYNLFFGIAGNNKYKGFRDQVTLFSKTPVAAKNVETLASQKTDYDASSFDTKGIRPYLMISTKDGIDASDFKFYVENVHIKID
Physico‐chemical
properties
protein length:533 AA
molecular weight: 59026,48830 Da
isoelectric point:5,35312
aromaticity:0,12008
hydropathy:-0,24465

Domains

Domains [InterPro]
DC_0903
STR
28–505
DC_0903
IPR012334
STR
29–394
IPR012334
IPR011050
STR
32–336
IPR011050
IPR024535
ENZ
34–265
IPR024535
A0A649V2M7
1 533
Architecture
STR
STR 28-505 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
A0A649V2M7
1 533
Domain Start End Length (AA) Confidence
N-terminal 1 48 48 0,9612
Central domain 49 352 305 0,9847
C-terminal 353 533 180 0,9632
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-48
Central
49-352
C-terminal
353-533

Taxonomy

  Name Taxonomy ID Lineage
Phage Leuconostoc phage P965
[NCBI] 		2662299 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Leuconostoc pseudomesenteroides
[NCBI] 		33968 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0044423 virion component Cellular Component IEA:UniProtKB-KW (UniProt)
GO:0051701 biological process involved in interaction with host Biological Process IEA:UniProtKB-ARBA (UniProt)
GO:0019058 viral life cycle Biological Process IEA:UniProtKB-ARBA (UniProt)

Tertiary structure

PDB ID
6de38d64159a96b146943ff2a994294a40bd8d6b58c7a76bdd6fea3ecab87032
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7356
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50