Protein

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Genbank accession
QOC54599.1 [GenBank]
Protein name
putative EPS depolymerase
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MVITATASDRCASIGALRASEPVFPGQRIDLKEYRQGSGFGGGFFIHDDTDTSTPDDGGYCVVTPKGARWKRALNSLHELNICHFGAEGNGVDTADAFARMMAFSQKNIPGMGVQYPTGTFKLSKFTNTKELGRFRVAGAPIDADYGYFTGTTLYGNNDQEGFILDIVARRTAISNINFEGAVDITVATNKKVAGKMGFLRNTCPGGQYVRVSNWTSSFVGGITFSILDALDTKFDQFYVSKHTNTFIYGRWSGQTWGVWDHETAIELSNFNIQSCTGPHALDLPRATQSQITNGWIEHTENPGDLSDGHWLIDNFSIEDSGKMLIQNARLTRHHINLQGTSGFDKGTGASNWPGLSGYEKGDLQLEYHGIEAAGSIAAKYFAPIGRMDNNKGSSQWFYLGSIRTTGVGENVKITLQGTRGYNGVNASETRLGGGGSAHGAGIISIKTVSSNYADVQWDGEGSCPVKNVKFTKPFKNTCHLFVELFDWTRYISPKVEVTSKSRFEAGVPFDFNFVGTTITLEEMQAMADAQTVAAGNTVTLNDAITGMYLGAKNGIGWNGNGELLLRFALTNGYLPVRITDPVTERVTQGYIKVESSIPSN
Physico‐chemical
properties
protein length:601 AA
molecular weight: 65307,23180 Da
isoelectric point:6,13653
aromaticity:0,10649
hydropathy:-0,29451

Domains

Domains [InterPro]
DC_0717
ATT
3–105
DC_0717 DC_0716
IPR059934
RBD
10–73
IPR059934
QOC54599.1
1 601
Architecture
ATT
STR
ATT 3-105 | STR 106-600 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QOC54599.1
1 601
Domain Start End Length (AA) Confidence
N-terminal 1 93 93 0,9864
Central domain 94 379 287 0,9753
C-terminal 380 601 221 0,9265
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-93
Central
94-379
C-terminal
380-601

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage pSal-SNUABM-04
[NCBI] 		2759192 No lineage information
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QOC54599.1 [NCBI]
Genbank nucleotide accession
MT710307 [NCBI]
CDS location
range 116727 -> 118532
strand +
CDS
ATGGTTATCACTGCTACTGCTTCTGACCGTTGTGCATCAATTGGCGCGTTACGCGCGAGCGAACCGGTTTTCCCTGGGCAACGTATTGATTTGAAAGAATATCGTCAAGGCTCCGGCTTTGGTGGTGGTTTCTTTATTCACGACGACACCGACACGTCTACCCCTGACGATGGCGGCTATTGTGTTGTCACCCCTAAAGGTGCCCGCTGGAAACGTGCACTGAACTCCCTGCATGAGCTGAATATTTGTCACTTCGGCGCAGAAGGGAACGGAGTCGATACCGCAGACGCGTTCGCGCGAATGATGGCCTTCTCCCAAAAGAACATTCCGGGTATGGGCGTGCAGTATCCGACCGGTACCTTTAAACTGTCGAAATTCACCAACACAAAAGAACTGGGACGCTTCCGTGTCGCCGGTGCTCCGATTGACGCTGACTACGGTTACTTCACGGGCACCACGCTTTACGGTAACAACGACCAAGAAGGGTTTATCCTGGATATCGTTGCACGCCGTACGGCTATTTCGAATATCAACTTCGAAGGTGCGGTGGATATCACCGTAGCGACCAACAAGAAGGTCGCTGGCAAGATGGGCTTCCTGCGCAACACTTGTCCGGGCGGTCAGTACGTCCGCGTCAGTAACTGGACCAGTTCGTTTGTAGGTGGTATCACCTTTAGCATCCTCGATGCACTGGACACCAAGTTCGACCAGTTCTACGTGTCCAAGCACACCAACACCTTCATCTACGGTCGTTGGTCTGGCCAGACGTGGGGCGTGTGGGATCACGAGACTGCCATTGAGCTGAGCAACTTTAACATCCAAAGTTGTACTGGCCCACATGCACTTGACCTGCCGCGTGCGACCCAGTCGCAAATCACCAACGGTTGGATTGAACACACCGAGAACCCAGGCGACCTGTCTGACGGCCATTGGCTGATTGACAACTTCTCGATTGAAGACTCGGGCAAAATGCTGATTCAAAACGCACGCCTGACACGTCACCACATCAACCTGCAAGGGACGAGTGGTTTCGATAAAGGCACGGGCGCATCGAATTGGCCGGGTCTGTCTGGTTACGAGAAAGGTGACCTGCAACTCGAATACCACGGTATTGAAGCAGCGGGTTCTATCGCTGCAAAATACTTTGCACCAATCGGTCGCATGGATAACAACAAAGGGTCTTCGCAGTGGTTCTATCTGGGCAGCATCCGCACCACCGGTGTGGGTGAGAACGTCAAGATTACCCTGCAAGGTACCCGTGGTTATAACGGCGTGAATGCCAGCGAAACCCGTCTGGGTGGCGGTGGTAGTGCACACGGTGCAGGCATCATCAGTATCAAAACTGTGTCGTCTAACTACGCTGATGTGCAATGGGATGGCGAAGGCTCTTGTCCGGTGAAGAACGTGAAGTTCACCAAACCGTTCAAGAACACCTGTCACCTGTTCGTTGAGCTGTTCGACTGGACGCGTTACATTTCGCCGAAAGTCGAAGTTACCTCGAAGTCACGCTTTGAAGCCGGTGTTCCATTCGACTTCAACTTCGTGGGTACAACGATTACGCTTGAAGAGATGCAAGCCATGGCTGATGCACAGACGGTCGCTGCGGGTAACACCGTGACACTGAACGATGCCATCACCGGGATGTATCTGGGTGCCAAAAACGGTATCGGTTGGAATGGCAACGGTGAACTGCTGTTACGCTTCGCCCTGACCAACGGCTACCTGCCGGTGCGGATTACTGACCCGGTCACTGAACGTGTAACCCAAGGTTACATCAAAGTGGAATCGAGCATTCCGAGCAATTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
a04f65894ab3db729fe586fb57dca0adbe69ab305f92da49ce13908f65584ea9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6801
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of giant Salmonella phage, pSal-SNUABM-04 Kwon,J., Park,S.C. and Kim,S.G. 2020-12-25 — GenBank