Protein

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Genbank accession
DAD52149.1 [GenBank]
Protein name
maturation protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
FRGPSFGVFTHTLTEVSMTTRTVFAKDSVSYNARQVTNGVIVIDDTIVRGADGNMTWTGADLPNYKEVIRNRGDATNNYHAVKWRLIHSYGSAYATYGDSVTTNEFSLRGTLGSLETPGPYVDSGTGDAQQRSVSQFIARARSATSPAQAGTILGEMAETIHQIRHPASSIRDAIGGYLSSVKKRTRNKPRKTKRAVVADTWLEYSFGIIPLISDTRDVAKALAKASLQIPVIKCSGTGNEESVTELPDASDSISNLVIRYRRRRKLVVTARTYGSVTMKTGGIPAFDESLGLTFQEFVPTIWNLIPYSWLVDYFFNVDDILSAATFCTSNIIFDGQSVKTSSTEECYDFQDVSVRNSFWKGSGVSAGTLGLETTVFNRTNVVTYSVPTLAFSLPGVRQFGNIAAVLAGRSRSISSTM
Physico‐chemical
properties
protein length:418 AA
molecular weight: 45617,76480 Da
isoelectric point:9,20333
aromaticity:0,09569
hydropathy:-0,16890

Domains

Domains [InterPro]
IPR005563
STR
146–330
IPR005563
IPR005563
STR
150–320
IPR005563
DAD52149.1
1 418
Architecture
STR
STR 146-330 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
DAD52149.1
1 418
Domain Start End Length (AA) Confidence
N-terminal 1 400 400 0,2048
Central domain 401 407 8 0,0023
C-terminal 408 418 10 0,9931
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-400
Central
401-407
C-terminal
408-418

Taxonomy

  Name Taxonomy ID Lineage
Phage ssRNA phage Gephyllon.2_6
[NCBI] 		2786145 Viruses > Riboviria > Orthornavirae > Lenarviricota > Leviviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
DAD52149.1 [NCBI]
Genbank nucleotide accession
BK014017 [NCBI]
CDS location
range 1 -> 1257
strand +
CDS
TTTAGGGGTCCCTCTTTTGGGGTTTTCACCCATACTCTAACCGAGGTTTCTATGACAACTAGGACAGTATTTGCAAAGGATTCCGTGTCGTATAATGCCAGGCAGGTCACGAATGGTGTTATCGTTATAGATGACACTATTGTTCGTGGTGCTGATGGTAATATGACTTGGACCGGCGCTGATCTTCCTAATTACAAAGAAGTTATTCGGAATAGAGGTGATGCCACAAACAACTATCATGCTGTTAAGTGGCGGCTCATTCATAGTTATGGTTCGGCATACGCAACGTATGGCGATTCCGTAACGACTAATGAGTTTTCCCTTCGAGGAACATTAGGTTCACTGGAAACTCCAGGACCTTATGTAGACTCCGGGACTGGTGATGCCCAACAACGGTCGGTGTCTCAGTTTATTGCCCGTGCTCGCAGTGCAACGTCTCCAGCGCAAGCTGGGACGATACTCGGCGAGATGGCAGAAACGATACATCAGATACGCCATCCTGCTTCATCAATCCGTGATGCTATCGGGGGTTACCTTTCATCCGTAAAGAAACGGACCAGGAACAAACCCCGAAAAACAAAACGTGCTGTTGTTGCGGATACGTGGCTAGAGTATTCTTTCGGTATAATACCTTTAATCTCTGATACGCGCGATGTGGCCAAGGCTTTAGCCAAGGCCTCGTTGCAAATACCAGTCATTAAGTGCTCGGGGACCGGTAACGAAGAATCTGTTACCGAACTTCCGGATGCTTCAGATTCGATTTCGAATCTTGTAATCCGATACCGTAGAAGACGGAAACTCGTTGTGACTGCTCGGACGTATGGCTCTGTCACCATGAAAACTGGTGGCATTCCCGCGTTCGATGAATCACTCGGGTTAACGTTTCAGGAGTTTGTTCCTACAATTTGGAATCTTATTCCTTACTCTTGGCTCGTCGACTATTTCTTTAATGTCGACGATATCCTGTCCGCTGCTACCTTTTGTACGAGTAATATCATCTTTGACGGCCAGTCAGTCAAAACCTCTTCAACAGAAGAGTGTTATGACTTTCAGGACGTCTCGGTGAGAAACTCGTTTTGGAAAGGAAGCGGCGTCTCGGCCGGTACGCTGGGTCTAGAGACTACAGTCTTTAACCGCACAAACGTTGTTACGTACTCGGTTCCCACGCTAGCGTTTTCGCTACCTGGGGTCCGACAATTCGGTAACATCGCAGCGGTTTTAGCTGGACGCTCTCGATCTATTTCATCAACAATGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
8c2f8b5daee4f2ab54c01c3e384d311db1fa5c47f0a7684e14885c10d8029885
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6085
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Leviviricetes taxonomy Stockdale,S.R., Callanan,J., Adriaenssens,E.M., Kuhn,J.H., Rumnieks,J., Shkoporov,A., Draper,L.A., Ross,P. and Hill,C. 2021-11-30 — GenBank