Protein

View in Explore
Genbank accession
YP_008125899.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MRKHYPEDLTGTSPDNIAEGSLSTSTYPNRFNLVVPFEAPFFRNGLEIKDTAGNLLFEGIDYYLALYYSAGAHAANAQLFGGIMLLTKTEITYKLQVLGSSYSVPESDIGKFLVNPDLTEPRNIDWSALMRYQIPIEPIDPPTNIDEAIARDEVAAAINNIRLKLEEKAGQLDTEIDTAIKALSRAANKLYADKLLQHHKTPHQHKYTPAQIGALGVGDAATNAIKAFSKTLAQLVAIMVENKISQRIVDTLIDDTMGQVFGRFKAINNDEVVYATQDGKSALRFSAGKILLTGTEAVIELAADSDNNQRGIGVSSRAGYDELFVPSKGNATGAKDVRPIYNGAFLITPDSVGLYLYAPLNSNAQPTFKSTDTVRMGGNGSQASPLNMTANPPAATLTTEGLFRLTDSVEVIAPNYALSQKGVNNLLLKLNNYVDETFKINGASFGATQTINLTAASFGLDKVNNTAPADKPVHQPFRDALTNKALKVHTHTASDLQNVPTASPTVSGLTYLYTVLDATTNKAAVSKLGYQLKLDIDAAEDKALNLLPSWVANSTYYGDSGFLPIPTMGQYEGTASVIDANFNAMQIEQDNRLYILRNGWDGYADSQRVFYWYREFEAGSNNLSSNYVATAVQYVPAGMAKKYPGIELKRVVVCGDDCAIFLGTDDRYYLVMFNGSADAAKHTDIVRVTYSPTPRATNQYNFAPTPSDDYLMVIDNDIYVIKSTLTNTEFFTCLWSISKDDLSKTDVQFQSVKLTGKHADGNVGRFATYALNTKDPATTSLYYITDAGAAKWTGARNVVHSARRNWMLGRNGRKIRVRGNCSTHVSNSATAFGTRWQISFVIDLDAKTAVLDNDYLPMKLDENGVTDNGGNYHTDNSDGFLYGNMIISTAPRAGYIDCIGNDNSNSDNQCVRISLNGKSLYDALRWDNPLTGRMGVQMAVNGAYGSVYQHRMRGLVQLGNTVKKVLMRRLGTSDCAQIAYDTAGSYNFPGYGGWGPSNDRTAFNESTYNVLTRCAYIFNGNSNYLNGAAFNSAGSSNYKNINGSAVLHNDTVTVNAAMWNDFQSMLTTRVAKWGQAASIFKTSWLNLFDLGGTNMCIATAMFGQKEADGVTYAYVYYFRIPMTFVNNVLALDYSNAVHIGNEDRIDFAWTGISNAGDYWQLRLIKRSDGWIIRPHAQCHCATVGGGGHMTFTLTCDANMANWTFNREMVNPSYGESDVVHLPETNEILVGTFLSGGMYYGGQAFSNNSRNYNTGSARNVILFGPQLAEGMILYITQDIPFFANMEEHNTPASQFDFKALFPSDYQNATLYFYVQLNAQGKAEYSVSKTLLSDTATRLYIGYVVTSTNAIVEVNINRVKRLGRVGSLLAHADNPYAHGYLAGGTLTESIYSNMENMGTIDTFSFPSFQDIYNSWYRFSHNNSTSAQPANESELVAWKYIDADDVVECTLNTVTFVGFISDELVGDYTFNTVITSNDTDNDAIAIVLAALKKEDSSVGREQTLCLAIGNSIEGHLDLQSRIQVKENYRQSSSRAIATLDTSTTDLLGWNKWYAHVYAERRGNMLYIAVEHAQLPTTGDRDTNIRQIVAAKKTLSMSQVRNSATYKYVEIDLATAAPTFARTCRFGYGATSQNAARFWNITRPGADLSKTYGTAAALETANQLAGNFDNITRVSLPAITASWMLLANNAEKLWPPAMQTTNAYSSPLASPAIRPYAQLLAAGEVFAVKTTFTPTSNSLMLNVNSDDGCSVYLNGVLQGTTTYNASATQTVTLTGALLNQANSLALVVRENPGNSPTYVAFELVQDGTTKLATSSTSLGAIKLPNPASPASIPGSAAIGLYTLTVPTGKDYMLALRQSAAITKAPVMFWTEERSFAGGRYIDIYYDATTAVVLDVMIHDSTLSA
Physico‐chemical
properties
protein length:1900 AA
molecular weight: 207540,32020 Da
isoelectric point:5,62282
aromaticity:0,10105
hydropathy:-0,20679

Domains

Domains [InterPro]
DC_0836
STR
438–538
DC_0836 G3DSA:2.60.120.260
DC_0236
STR
510–1384
DC_0236
YP_008125899.1
1 1900
Architecture
STR
STR
STR 438-1384 | STR 1713-1827 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_008125899.1
1 1900
Domain Start End Length (AA) Confidence
N-terminal 1 525 525 0,6836
Central domain 526 803 279 0,8332
C-terminal 804 1900 1096 0,3404
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-525
Central
526-803
C-terminal
804-1900

Taxonomy

  Name Taxonomy ID Lineage
Phage Cronobacter phage CR5
[NCBI] 		1195085 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Cronobacter sakazakii
[NCBI] 		28141 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008125899.1 [NCBI]
Genbank nucleotide accession
NC_021531 [NCBI]
CDS location
range 138348 -> 144050
strand -
CDS
ATGAGAAAACATTATCCCGAAGATTTGACGGGTACAAGCCCCGATAACATCGCGGAAGGTTCCCTCAGTACGTCGACTTATCCTAACCGTTTCAACTTAGTGGTGCCTTTCGAGGCACCCTTCTTTCGTAACGGATTAGAGATTAAAGATACGGCGGGGAATCTGTTATTTGAAGGTATCGACTATTACCTCGCGTTGTATTACTCTGCCGGTGCACACGCCGCGAATGCCCAGCTTTTCGGCGGGATAATGCTGCTGACGAAAACCGAGATTACCTATAAGCTGCAGGTGCTCGGCTCGTCTTATTCCGTTCCTGAATCGGATATCGGCAAGTTCCTCGTTAACCCCGACCTGACCGAACCACGCAACATCGATTGGTCAGCATTGATGCGCTACCAAATTCCCATCGAGCCTATTGACCCGCCGACGAATATCGACGAGGCCATTGCGCGTGATGAGGTTGCGGCAGCCATCAACAACATCCGTTTAAAGCTCGAAGAGAAAGCCGGCCAGCTTGATACTGAAATCGATACGGCTATTAAGGCGCTCTCTCGCGCAGCGAACAAACTGTATGCAGACAAACTGTTACAGCACCACAAAACGCCACATCAGCACAAATACACCCCTGCCCAAATTGGGGCGTTAGGTGTAGGTGATGCTGCTACGAATGCCATCAAAGCGTTCAGTAAGACGCTGGCGCAGTTAGTAGCGATTATGGTCGAGAATAAAATCTCTCAGCGTATCGTCGATACGTTGATTGATGACACCATGGGTCAGGTGTTCGGTCGTTTCAAAGCGATTAACAATGACGAAGTGGTGTACGCGACCCAAGACGGGAAATCCGCCCTGCGCTTTAGTGCGGGTAAGATTCTCCTGACCGGAACAGAAGCGGTGATTGAACTGGCTGCTGACAGCGATAATAACCAGCGCGGTATTGGGGTTTCCTCACGTGCGGGTTACGATGAGCTGTTCGTTCCGTCCAAAGGTAATGCAACCGGTGCCAAAGACGTCCGTCCGATTTATAACGGTGCGTTCTTGATTACTCCTGACTCAGTAGGGTTGTACTTGTATGCCCCTCTGAACTCCAACGCGCAGCCGACCTTTAAGTCGACTGACACGGTGCGTATGGGTGGTAACGGTTCACAGGCCTCTCCGTTAAACATGACGGCTAACCCTCCGGCAGCGACCCTGACGACTGAGGGCCTGTTCCGTCTGACGGACAGTGTTGAGGTTATTGCTCCGAATTATGCGCTCTCGCAGAAAGGGGTGAACAACCTGTTGCTGAAACTGAATAACTACGTTGATGAGACGTTCAAAATCAACGGAGCGTCTTTCGGTGCAACGCAGACGATTAACTTGACCGCAGCGTCTTTCGGTCTGGATAAAGTCAACAACACCGCCCCCGCCGATAAGCCTGTACATCAGCCGTTCCGTGATGCGCTGACCAACAAAGCGCTGAAGGTTCACACGCATACTGCCAGTGATTTGCAAAACGTACCCACTGCCTCGCCGACGGTTTCCGGCTTAACGTATCTGTATACGGTGCTGGATGCCACGACTAATAAAGCGGCGGTCTCCAAACTCGGTTACCAGTTAAAACTGGATATCGATGCTGCGGAAGACAAAGCACTGAACCTGCTACCGAGCTGGGTGGCGAACAGCACCTACTACGGTGATTCCGGGTTCCTGCCTATCCCAACAATGGGGCAGTATGAAGGGACAGCGTCTGTGATCGATGCTAACTTTAACGCGATGCAGATTGAACAAGACAACCGTCTCTACATTCTGCGTAACGGTTGGGACGGTTATGCTGATTCGCAGCGCGTGTTCTATTGGTACCGTGAGTTCGAAGCGGGTTCCAATAACCTATCCTCGAATTATGTGGCCACAGCAGTACAGTACGTTCCTGCGGGGATGGCGAAGAAGTATCCGGGTATTGAGCTTAAACGCGTGGTGGTTTGTGGCGACGACTGTGCTATCTTCTTAGGCACAGACGACCGTTACTATCTGGTGATGTTTAACGGTAGTGCGGATGCTGCGAAGCATACCGACATCGTTCGTGTGACATATTCCCCGACCCCTCGGGCAACCAATCAGTATAACTTCGCTCCGACACCGAGTGATGATTATCTGATGGTTATCGATAACGACATCTATGTCATTAAGAGCACGTTGACCAACACGGAGTTCTTTACGTGCCTGTGGTCTATCAGCAAAGACGATCTCAGTAAGACAGACGTACAGTTCCAGTCTGTCAAACTGACCGGTAAACACGCCGATGGTAACGTGGGTCGTTTTGCGACCTATGCGCTGAATACGAAAGACCCGGCCACGACCAGCCTCTACTACATCACCGATGCGGGTGCTGCGAAGTGGACAGGTGCGCGCAACGTGGTGCACTCTGCACGTCGCAACTGGATGCTTGGACGTAATGGTCGTAAGATTCGTGTGCGTGGAAACTGTAGTACACACGTTTCGAACTCCGCAACTGCTTTCGGTACCCGCTGGCAGATTTCTTTCGTTATCGACCTCGATGCGAAGACTGCGGTACTGGATAACGATTACCTGCCGATGAAACTCGACGAGAACGGTGTCACCGATAATGGTGGGAATTACCACACCGACAACTCTGACGGTTTCCTCTACGGGAATATGATCATCTCCACCGCACCCCGCGCTGGTTACATTGACTGTATCGGTAACGACAACAGTAACAGTGACAACCAGTGTGTGCGTATCAGTCTTAACGGCAAGTCGTTGTACGATGCGCTGCGTTGGGATAATCCGCTGACCGGGCGGATGGGTGTCCAGATGGCAGTAAACGGGGCGTACGGCTCAGTGTACCAACATCGCATGCGTGGTTTAGTGCAGCTGGGTAACACGGTTAAAAAGGTGCTGATGCGCCGTCTGGGTACCAGCGATTGCGCCCAGATAGCTTACGACACCGCAGGCTCTTACAACTTCCCGGGCTATGGTGGTTGGGGTCCTTCGAATGACCGTACCGCGTTTAACGAGTCAACGTACAACGTGTTAACCCGCTGTGCCTACATCTTCAACGGCAACAGTAATTACCTCAACGGGGCCGCTTTTAACTCCGCTGGGAGCAGTAATTACAAAAACATTAACGGTTCTGCAGTGCTGCACAACGACACAGTGACTGTTAATGCTGCGATGTGGAATGATTTCCAGTCGATGCTGACGACCCGTGTGGCGAAGTGGGGACAAGCGGCGAGTATCTTCAAAACAAGCTGGTTAAACCTGTTTGATTTGGGCGGTACAAACATGTGTATCGCTACGGCGATGTTTGGTCAGAAAGAAGCGGACGGTGTCACGTATGCGTACGTCTACTATTTCCGCATCCCAATGACCTTCGTTAACAACGTACTGGCGCTGGATTACAGCAACGCGGTGCACATTGGTAACGAAGACCGTATCGATTTCGCGTGGACGGGTATCAGCAATGCAGGGGATTACTGGCAGCTGCGTTTAATTAAACGCAGTGACGGATGGATTATCCGTCCTCATGCGCAATGTCATTGTGCGACTGTCGGTGGCGGGGGTCACATGACCTTCACGTTGACATGCGATGCGAACATGGCAAACTGGACGTTTAACCGAGAAATGGTTAACCCGTCCTATGGCGAAAGCGACGTTGTCCATCTGCCTGAAACGAACGAGATTCTGGTTGGTACGTTCTTGTCTGGTGGGATGTATTACGGCGGTCAAGCATTTAGCAACAACAGTCGTAATTACAACACTGGCAGTGCACGTAACGTGATCCTGTTCGGACCACAGCTGGCCGAGGGGATGATTCTTTACATTACGCAGGACATTCCGTTCTTTGCGAACATGGAAGAGCACAATACGCCAGCCTCGCAATTTGACTTCAAAGCGTTGTTCCCAAGCGACTACCAGAACGCCACACTGTACTTCTACGTGCAGTTAAACGCACAAGGTAAGGCAGAGTACAGCGTTTCCAAAACGTTGCTTAGCGACACTGCTACGCGCCTCTATATCGGGTACGTGGTGACGTCGACTAACGCTATCGTTGAAGTCAACATCAACCGTGTGAAACGTTTGGGTCGAGTTGGTTCTCTGTTGGCGCACGCGGACAACCCGTACGCGCACGGATATCTGGCAGGCGGGACCTTGACCGAGTCTATCTACTCGAACATGGAGAACATGGGTACCATCGACACGTTCTCATTCCCGTCGTTCCAGGATATCTACAACAGCTGGTACCGTTTCAGTCACAACAACTCGACGTCGGCCCAGCCTGCAAACGAGTCTGAACTCGTAGCATGGAAATATATCGACGCGGATGATGTGGTTGAATGTACGTTGAACACAGTGACGTTCGTTGGGTTTATTTCGGATGAACTGGTTGGTGATTACACGTTTAACACGGTTATCACTTCTAACGACACTGATAATGATGCCATCGCGATTGTGCTGGCTGCGTTGAAGAAGGAAGATTCGTCGGTAGGGCGCGAACAAACGCTTTGCTTAGCTATCGGTAACTCAATCGAGGGGCACCTTGATTTACAGTCTCGGATACAGGTTAAGGAAAACTACCGACAGTCATCTTCTCGGGCGATCGCCACCTTAGACACTTCGACCACCGATTTACTGGGGTGGAATAAGTGGTATGCGCATGTCTACGCTGAACGGCGCGGTAACATGCTGTATATTGCGGTTGAACATGCACAATTGCCAACAACCGGTGATCGTGACACGAACATCCGACAAATCGTGGCGGCGAAGAAAACGTTGTCGATGAGCCAGGTGCGTAACTCTGCAACGTACAAATACGTTGAGATTGACTTGGCCACTGCAGCCCCGACATTTGCCCGCACTTGTCGTTTTGGCTACGGGGCTACATCTCAAAACGCGGCACGATTCTGGAACATCACCCGTCCGGGGGCGGATTTGTCGAAGACTTACGGCACTGCTGCGGCGCTGGAAACAGCGAACCAGCTCGCCGGTAACTTCGATAACATCACTCGTGTGAGCCTGCCTGCGATAACCGCGTCGTGGATGTTGCTAGCTAACAATGCTGAAAAGCTGTGGCCACCTGCAATGCAGACGACCAACGCGTATAGCAGTCCGTTAGCATCGCCAGCGATTCGCCCATATGCTCAGTTGTTGGCAGCGGGCGAGGTGTTCGCTGTAAAAACAACTTTCACACCAACAAGCAACTCTTTAATGTTGAATGTGAATAGCGACGACGGTTGTAGTGTATACCTGAACGGTGTGTTGCAGGGGACTACTACGTACAACGCATCAGCTACGCAAACGGTTACACTGACCGGGGCGTTGCTGAATCAAGCCAACTCGTTGGCGCTTGTCGTAAGAGAAAATCCAGGTAATTCACCGACGTATGTGGCGTTTGAATTAGTGCAGGATGGGACAACGAAACTCGCTACCTCAAGTACGTCATTAGGTGCGATTAAGTTACCCAACCCGGCTTCCCCTGCTTCTATTCCGGGCAGTGCTGCTATCGGCCTGTACACGTTGACCGTGCCTACGGGTAAAGACTACATGCTGGCCCTGCGTCAGTCTGCAGCCATTACCAAAGCCCCAGTGATGTTCTGGACGGAGGAACGTAGCTTCGCAGGAGGCCGGTATATCGACATCTACTACGATGCGACTACCGCGGTTGTCCTTGATGTTATGATTCATGATTCCACCCTGAGCGCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
05f466a56eb7701514a79d92bdadae1b04fa8d33bd20d4d5157830d06a5cbaa7
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,6610
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Cronobacter sakazakii Bacteriophage CR5 Shin,H., Lee,J.-H., Kim,Y. and Ryu,S. 2012-06 — GenBank