Protein

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Genbank accession
YP_009195083.1 [GenBank]
Protein name
long tail fiber protein proximal connector
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MANNEFMALFGPDSFTASVFSEANAVKYRLVVRGTNNDSAVNSVEVSINGADIINRRTQVARGINLAVIDGTTLALLDYKSFDMYGDPATNGNAIKDYLNSLPANRIVCFYTFDAIKSDDNFLAIMRKLGSVAWPETRFFSIPTTTNSNSQRSSYSAIYSSTMKKICMENFVGGSGTGLKDNTTSFVEVVFDEFSDIGVTGIPERMVDDVQTYQNSGDMYGFHLYGLWSIGNDVYLGDTFKFTGDLYCSKELRDAGGEVHLYMWTENGSGQWIKSTILRTTGLAPDTWHSLTGYFTIPTDAVNARMGSQVYHYPSTVKVGLAQCRNVQIAKVPREEVDRNGAAIGVNGIRMQTLSEVTATGTENPIEQLLSLPVSPTGVISDKKISSHNFAELDYIVSDPVEYTSTSTAEYQFKEWTATQQAAVTKASLSSYGLKAGDTIRMQCQMKRDANAIANSKSAYIVMQFWDADNKYIKGVGMVDSGTVPNIYSFYKAEGVVPAGAVTFDFGLYRYPNNTNIGTVSAKDVKLSIVR
Physico‐chemical
properties
protein length:531 AA
molecular weight: 58254,76310 Da
isoelectric point:5,25916
aromaticity:0,10734
hydropathy:-0,19096

Domains

Domains [InterPro]
DC_0004
STR
1–531
DC_0004
PS52031
LEC
24–206
PS52031
IPR039477
STR
62–132
IPR039477
YP_009195083.1
1 531
Architecture
STR
STR 1-531
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009195083.1
1 531
Domain Start End Length (AA) Confidence
N-terminal 1 71 71 0,2761
Central domain 72 270 200 0,6122
C-terminal 271 531 260 0,4092
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-71
Central
72-270
C-terminal
271-531

Taxonomy

  Name Taxonomy ID Lineage
Phage Citrobacter phage Margaery
[NCBI] 		1701810 Uroviricota > Caudoviricetes > Pantevenvirales > Pseudotevenvirus > Pseudotevenvirus margaery
Host Citrobacter
[NCBI] 		544 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae >
Host Citrobacter sp.
[NCBI] 		1896336 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009195083.1 [NCBI]
Genbank nucleotide accession
NC_028755 [NCBI]
CDS location
range 167675 -> 169270
strand +
CDS
ATGGCGAATAACGAATTTATGGCGTTATTCGGCCCTGATAGTTTCACGGCGAGTGTGTTTTCAGAAGCAAACGCCGTGAAATATCGCCTTGTTGTCCGTGGAACGAATAACGATTCTGCGGTCAACTCGGTTGAGGTATCTATTAACGGGGCTGATATTATTAACAGGCGGACACAAGTTGCTCGCGGAATTAACCTGGCAGTCATTGATGGAACAACTTTAGCATTATTGGATTACAAATCATTTGATATGTATGGTGATCCTGCTACGAACGGGAATGCGATTAAAGACTACCTGAATTCACTTCCAGCGAACAGAATTGTGTGTTTTTACACTTTCGATGCTATTAAAAGTGACGACAACTTTTTAGCCATAATGAGAAAACTTGGTTCGGTTGCATGGCCTGAAACTCGGTTCTTTAGTATTCCGACGACAACAAACAGCAATTCCCAACGTTCATCTTATTCAGCTATCTATTCATCTACGATGAAAAAGATCTGTATGGAAAACTTTGTGGGTGGTTCTGGTACGGGGTTGAAAGACAATACAACGAGTTTTGTTGAAGTTGTGTTTGATGAATTTAGTGATATCGGGGTAACTGGTATTCCTGAAAGAATGGTTGATGATGTCCAGACATACCAGAACAGCGGGGATATGTACGGCTTCCATTTATACGGATTGTGGTCAATCGGTAATGATGTTTATCTGGGTGACACCTTCAAATTTACTGGGGATCTGTATTGTTCAAAAGAACTTCGTGATGCTGGGGGAGAAGTTCACCTGTATATGTGGACAGAAAACGGTAGCGGACAATGGATCAAATCAACCATTCTCAGAACAACCGGATTAGCCCCTGATACATGGCATTCGTTAACAGGATATTTCACTATTCCTACTGATGCGGTAAATGCTCGAATGGGTTCACAGGTGTATCATTATCCGTCAACTGTAAAAGTCGGGCTTGCTCAGTGTCGAAATGTCCAAATTGCTAAAGTACCGCGCGAAGAAGTAGATCGTAACGGTGCTGCGATCGGTGTGAACGGTATACGAATGCAAACACTTTCCGAAGTGACTGCAACAGGAACAGAAAACCCGATTGAACAATTGCTTTCTCTGCCTGTTTCGCCTACTGGGGTTATCAGTGACAAGAAGATCAGTTCGCATAACTTTGCTGAACTTGATTATATTGTTTCTGATCCGGTTGAATATACTTCGACAAGCACAGCGGAATACCAGTTCAAAGAATGGACTGCTACCCAGCAAGCGGCGGTAACGAAAGCGTCACTAAGCAGTTACGGATTAAAAGCTGGTGATACGATCCGTATGCAATGCCAAATGAAACGCGATGCGAATGCGATTGCTAACAGTAAATCAGCATATATCGTAATGCAGTTCTGGGACGCTGATAACAAATATATTAAAGGGGTCGGTATGGTTGATTCCGGTACGGTTCCAAACATATATTCGTTCTATAAAGCAGAAGGGGTTGTTCCTGCTGGTGCGGTTACGTTTGATTTCGGTTTATATCGTTATCCAAACAACACAAACATCGGTACGGTATCCGCTAAAGACGTTAAACTGTCAATCGTGAGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
33626cc988a28e37034519522379b4fcdb45b17bf4793848a1cc63431eb4c494
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6556
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Complete Genome of Citrobacter freundii Myophage Margaery Yi,D., Cadungog,J.N., Cahill,J.L., Rasche,E.S. and Everett,G.F.K. 2015-02-26 — GenBank