Protein

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Genbank accession
YP_001671929.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MALERQEVKNPTGIVTDIAPADLPLEKWSFGNNVRFKNGKAQKTLGHTPIFDTAQAPILDMFPFIRNNIPYWLLCSEQRLYLADGTTIIDVSPGPYSASITNRWSVGSFNGVIFANDGVNPPHHLPPSESTFRVLPNFPANTTFKRLKSFKNFLVGLNATSNSVEMPQMVWWSTSADAGGVPASWDPTDPTKDAGQNTLADTNGAIVDGVKLRDSFIIYKEDSVYSMRYIGGLFIFQFQQLFNDVGILGPNCAVEFDGNHFVVGHGDVYVHNGVQKQSVIDAQVRKFFFSDINPDNYQRTFVLADHVNTEMWVCYSSTRSKPGKHCDRAIIWNWKENTWSIRDLPNVLSGAYGIIDPKVSNLWDDDPNPWDTDTSVWGEGSYNPAKSSMIFSSFQDKKLFLFGNNSTFSGQNFVSTLERSDIYLGDDRMMKTVSAIIPHITGNGTCNIWVGNAQVQGSGIRWKGPYPYRIGQDYKIDTKHVGRYIALKFDFSSEGDWYFNGYTIEMAPKAGMR
Physico‐chemical
properties
protein length:513 AA
molecular weight: 57538,02140 Da
isoelectric point:5,94851
aromaticity:0,12865
hydropathy:-0,34172

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_001671929.1
1 513
Domain Start End Length (AA) Confidence
N-terminal 1 373 373 0,7645
Central domain 374 502 130 0,0833
C-terminal 503 513 10 0,9957
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-373
Central
374-502
C-terminal
503-513

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage LUZ24
[NCBI] 		484895 Uroviricota > Caudoviricetes > Bruynoghevirus >
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales
Host Pseudomonas aeruginosa PAO1
[NCBI] 		208964 Bacteria > Proteobacteria > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_001671929.1 [NCBI]
Genbank nucleotide accession
NC_010325 [NCBI]
CDS location
range 34296 -> 35837
strand -
CDS
ATGGCCCTAGAGAGACAAGAGGTCAAGAACCCTACGGGGATTGTGACCGATATCGCCCCCGCTGACCTGCCACTGGAGAAATGGTCCTTCGGGAACAACGTCCGGTTTAAGAACGGCAAGGCTCAGAAGACTCTGGGCCATACGCCTATCTTTGATACAGCCCAGGCCCCAATCTTGGATATGTTTCCTTTCATCCGGAATAACATCCCATATTGGCTCCTGTGTTCTGAACAACGGTTGTATCTAGCCGACGGGACTACAATCATCGATGTATCCCCAGGACCTTACTCTGCTAGTATAACTAACAGATGGTCTGTAGGATCGTTCAACGGGGTAATCTTTGCTAACGATGGGGTTAACCCTCCTCATCATCTTCCACCGTCAGAATCAACCTTTAGGGTACTCCCTAACTTCCCAGCGAATACTACTTTTAAGAGGCTTAAGTCCTTTAAGAACTTCCTGGTTGGCTTAAACGCTACAAGTAACTCTGTAGAAATGCCACAGATGGTCTGGTGGAGTACCTCGGCTGATGCTGGTGGTGTACCCGCTTCTTGGGACCCAACGGACCCTACTAAGGATGCTGGTCAGAACACCTTGGCTGATACCAATGGTGCTATCGTGGATGGTGTGAAGCTTCGTGACTCCTTCATCATCTACAAGGAAGACTCTGTATACTCCATGCGGTATATCGGTGGATTGTTCATCTTCCAGTTCCAGCAGTTGTTTAACGACGTAGGCATCCTCGGGCCCAACTGTGCAGTAGAGTTCGATGGTAACCACTTTGTAGTAGGTCACGGTGATGTATATGTCCACAACGGTGTGCAGAAGCAGTCTGTTATTGATGCCCAGGTCCGTAAGTTCTTCTTCTCGGATATTAACCCTGACAACTATCAACGGACATTCGTACTTGCAGACCACGTGAATACTGAAATGTGGGTATGCTACTCTTCCACTAGGTCTAAGCCAGGTAAGCACTGCGACAGGGCTATCATCTGGAACTGGAAGGAAAATACTTGGAGTATCCGAGACCTTCCCAACGTTCTCAGTGGAGCCTACGGGATCATCGATCCTAAGGTGTCTAACCTCTGGGATGACGACCCCAACCCCTGGGATACCGATACTTCGGTCTGGGGTGAAGGCTCTTATAACCCAGCAAAGTCCAGTATGATCTTCTCGTCTTTCCAGGATAAGAAGTTGTTCCTCTTTGGTAATAACTCTACATTCTCTGGACAGAACTTCGTCAGTACCCTTGAGAGATCCGATATCTATCTCGGGGATGATCGAATGATGAAGACAGTGAGTGCCATCATCCCGCATATCACGGGTAACGGCACCTGCAACATCTGGGTTGGTAATGCTCAGGTACAAGGTTCTGGTATTCGGTGGAAGGGCCCCTACCCATACCGGATTGGCCAGGACTATAAGATTGACACTAAACATGTGGGCCGGTACATAGCCTTGAAGTTCGACTTCTCCTCAGAGGGTGACTGGTACTTCAACGGATACACTATTGAAATGGCCCCGAAGGCAGGTATGCGATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
907f0b89847848dedd6b88c6124ad10c126c7a9ed75c9fe0fa19e3ff52322031
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8926
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Analysis of the genome, proteome and transcriptome of Pseudomonas aeruginosa phage LUZ24 Ceyssens,P.J., Demeke,M., Lavigne,R., Ackermann,H.W., Noben,J.P., Volckaert,G. and Hertveldt,K. 2015-11-06 — GenBank