Protein

View in Explore
UniProt accession
A0A1D3RL08 [UniProt]
Protein name
Receptor-recognizing protein gp38
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,54
Protein sequence
MAISGPNIGTSAFNETGQRAMSAARARVRLVASPGRLSEMIGRSVEITITLGSNHSYDRNDLINKLRALGSTPAVVVISGDLVAQNTGVPCLEFPSNLPNEYVHLRVNANVYGRGGAGCSNGQTSGLPGGPCILNSFGTRLRIENNAAICGGGGGGGGVKVGKNVVSGGSGGRPFGAAGVASGRDSINGNAASLTAPGGTPAKTRYGTTGGAGGNVGAAGAAGTNDGGNITNYPGGAAGAAVYGNAPTWIKVGSVYGSRV
Physico‐chemical
properties
protein length:260 AA
molecular weight: 25473,09280 Da
isoelectric point:9,90133
aromaticity:0,04615
hydropathy:-0,08192

Domains

Domains [InterPro]
IPR048291
ATT
1–41
IPR048291 IPR007932
DC_1679
STR
4–182
DC_1679
A0A1D3RL08
1 260
Architecture
ATT
STR
RBD
ATT 1-41 | STR 42-182 | RBD 183-260
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
A0A1D3RL08
1 260
Domain Start End Length (AA) Confidence
N-terminal 1 106 106 0,2088
Central domain 107 249 144 0,2260
C-terminal 250 260 10 0,9701
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-106
Central
107-249
C-terminal
250-260

Taxonomy

  Name Taxonomy ID Lineage
Phage Cronobacter phage Pet-CM3-4
[NCBI] 		1892569 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Karamvirus
Host Cronobacter malonaticus LMG 23826
[NCBI] 		1159491 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Cronobacter > Cronobacter malonaticus

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
SCN45950.1 [NCBI]
Genbank nucleotide accession
LT614807 [NCBI]
CDS location
range 162049 -> 162831
strand +
CDS
ATGGCTATTTCAGGTCCTAATATTGGCACTTCAGCTTTTAATGAAACAGGACAAAGAGCAATGTCAGCTGCTCGAGCCAGAGTAAGACTTGTTGCTTCTCCTGGGCGTTTATCTGAAATGATTGGACGCTCTGTAGAAATAACGATAACTTTAGGCTCTAATCATAGTTATGATAGAAACGACTTGATTAATAAACTTCGTGCATTGGGTTCTACCCCAGCGGTTGTTGTAATTTCAGGTGATTTGGTTGCTCAAAATACTGGTGTTCCTTGTTTAGAATTTCCATCTAACTTACCGAACGAATATGTTCATTTACGAGTTAATGCTAACGTATATGGTAGGGGTGGTGCAGGTTGTAGTAATGGGCAAACATCAGGTCTTCCAGGTGGGCCGTGTATTTTAAACAGCTTTGGTACTCGTCTTCGCATAGAAAATAACGCTGCTATTTGTGGTGGCGGTGGCGGTGGCGGTGGCGTAAAAGTCGGAAAAAACGTAGTTTCAGGCGGTTCTGGCGGGCGTCCATTTGGCGCTGCGGGTGTAGCAAGTGGACGAGATTCAATAAATGGTAATGCAGCATCGTTAACTGCTCCTGGTGGAACTCCTGCAAAAACTCGTTATGGCACAACCGGTGGTGCGGGCGGTAACGTTGGTGCAGCAGGCGCTGCTGGTACAAACGATGGCGGTAACATTACCAACTATCCAGGCGGCGCAGCCGGCGCAGCAGTATATGGAAATGCTCCAACTTGGATTAAAGTTGGTAGCGTTTATGGCTCAAGAGTTTAA

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0098015 virus tail Cellular Component IEA:UniProtKB-KW (UniProt)
GO:0098671 adhesion receptor-mediated virion attachment to host cell Biological Process IEA:UniProtKB-ARBA (UniProt)
GO:0046718 symbiont entry into host cell Biological Process IEA:UniProtKB-KW (UniProt)

Tertiary structure

PDB ID
3d6187d5dc741a3f8b9eb021ac9c4a0dc41ed21ddf3611c34f3ad821fb516f18
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8628
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50