Protein

View in Explore
Genbank accession
NP_064745.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,80
Protein sequence
MAKKPTVTTLQSGFNSTEVLNENFENIRDAFDNTLSLDGSTPNAMQADLDLNGNNLIGATGLLINGTDYLADVEAAKAAALVAQAAAELAENNAETAEVNAEASETAAGLSATAAATSATNAGASETAASASATASATSATNSATSASQAATSASAAAVSEGNAATSETNAANSATSASGSASTATTQASAASVSATNAATSASNAATSATNAAASQAAAATSETNAAASESTVTTSATNAATSEANAATSASTATTQATNAATSASTASTSATNAATSETNAASSASSAASSATSAQASKDAALAALDSFDDRYLGQKVSDPTLDNDGNALVAGALYFNTTDGIMKVYDGSVWLAAYASLSGALIATNNLSDVLDVTASRTNLGLGTAATTASTDYATAAQGALAVSAVQPNDSPSFGSVTVTGTVDGRNVAADGSKLDGIEAGATADQTASEILTSIKTVDGSGSGLDADLLDGIHASSFLQGNQTITLSGDVSGSGTTSILVTVADDSHNHIIANVDGLQTALDGKWSKGADIGGGC
Physico‐chemical
properties
protein length:540 AA
molecular weight: 51935,65180 Da
isoelectric point:4,05003
aromaticity:0,02778
hydropathy:-0,02148

Domains

Domains [InterPro]
DC_2003
STR
1–259
DC_2003
Coil
Unmapped
82–107
Coil PR00833 PR00833 PR00833
DC_2093
STR
250–535
DC_2093
NP_064745.1
1 540
Architecture
STR
STR 1-535 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Roseobacter phage SIO1
[NCBI] 		2905867 Uroviricota > Caudoviricetes > Zobellviridae > Siovirus > Siovirus americense
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
NP_064745.1 [NCBI]
Genbank nucleotide accession
NC_002519.1 [NCBI]
CDS location
range 6348 -> 7970
strand -
CDS
ATGGCTAAGAAACCAACAGTCACTACACTACAGTCAGGGTTTAACTCCACTGAGGTGTTGAATGAAAACTTTGAGAACATCAGGGATGCTTTTGATAATACTCTGTCTTTGGACGGGAGTACTCCTAATGCTATGCAGGCAGACCTAGACCTCAACGGTAACAACCTTATCGGTGCTACTGGTTTGCTTATCAATGGTACTGATTACCTAGCTGATGTAGAGGCTGCTAAGGCTGCTGCTTTGGTTGCACAGGCTGCGGCTGAGTTGGCTGAGAACAATGCTGAGACAGCTGAAGTTAATGCTGAAGCTTCTGAGACTGCTGCTGGTTTGTCAGCTACAGCTGCTGCTACGAGTGCAACTAACGCAGGAGCCTCTGAGACTGCTGCTAGTGCCTCTGCTACTGCTTCGGCTACCTCAGCTACCAATTCAGCTACTTCGGCTTCTCAGGCGGCTACCAGTGCCTCTGCTGCTGCAGTAAGTGAGGGTAATGCTGCTACATCAGAAACGAATGCAGCTAACAGTGCTACCTCTGCTTCAGGTAGTGCTTCTACTGCTACTACTCAAGCGAGTGCTGCTTCTGTTTCGGCGACTAACGCTGCTACAAGTGCAAGTAATGCTGCAACCTCAGCAACCAATGCTGCCGCTTCTCAGGCTGCTGCTGCAACCAGTGAAACAAATGCTGCGGCCTCTGAGTCTACTGTTACGACATCAGCAACTAATGCTGCTACATCTGAAGCAAACGCAGCTACTTCTGCTTCTACAGCTACAACTCAGGCAACCAATGCTGCAACGTCTGCATCTACCGCTTCTACAAGTGCGACCAATGCGGCTACATCTGAGACCAATGCTGCCTCCTCAGCTTCTAGTGCAGCATCTTCTGCGACCTCTGCTCAGGCTTCTAAAGATGCTGCCTTGGCTGCTTTGGACTCGTTTGATGATCGTTACCTTGGCCAGAAGGTATCTGATCCTACTCTAGACAATGATGGTAATGCTCTTGTAGCTGGTGCTCTGTACTTCAACACCACAGACGGTATCATGAAGGTTTATGATGGTTCTGTTTGGCTTGCCGCTTATGCCTCTTTGTCAGGTGCTTTGATTGCTACTAACAACCTTTCGGACGTTCTGGACGTTACGGCGTCACGTACAAACCTTGGCCTTGGGACCGCAGCCACTACAGCCTCTACTGATTACGCCACGGCTGCTCAGGGCGCTCTCGCTGTCAGCGCAGTGCAACCCAATGACAGCCCGTCATTCGGCTCGGTTACAGTCACTGGCACGGTTGATGGCCGTAATGTTGCTGCGGATGGCTCAAAGCTGGATGGGATCGAGGCTGGCGCTACCGCCGATCAGACGGCCTCCGAAATTCTGACTTCTATCAAAACCGTTGACGGCTCTGGGTCTGGTCTAGATGCGGACCTCTTGGACGGCATTCACGCTTCCTCATTCCTGCAAGGCAATCAGACAATTACGCTTTCTGGTGACGTATCTGGATCGGGGACGACCTCTATTTTAGTCACCGTTGCGGACGACAGCCACAACCATATCATTGCTAACGTAGATGGATTGCAGACTGCTCTGGACGGGAAGTGGTCAAAGGGCGCCGACATTGGCGGGGGGTGTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
c1135d4947aeee8626d8bfb2a478aba6e7ea536623e2ec963c1f541b32bbf3e2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6501
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The complete genomic sequence of the marine phage Roseophage SIO1 shares homology with nonmarine phages Rohwer,F.L., Segall,A.M., Steward,G., Seguritan,V., Breitbart,M., Wolven,F. and Azam,F. 2000 — GenBank