Protein

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Genbank accession
AUS02986.1 [GenBank]
Protein name
pectin lyase fold/virulence factor
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MTTKVNFRNTEGLLPEASLSNSSVISTGSTDSRTLEDRFSDVVNVKDFGAVGDGVTDDTAAIQATFEYVSNIHGTSRPTSIYFPSGTYNFTTITINDLYDMTINFNGALLKANSEVVLSHAIRFQNYNNIKLLNLGALYTTRRANYTYGIRFAAGPGGSIDPTNGLGKEMAMTSGTILRFARGIDVGTDTIEVNMGQNSFTNVHIKECGLGLASRGSQTIVSFAGGSTGGAEHSDFNLPERDIAGVAAYGGVVALSSSEILKTSGAGRGIIISNCDNPTYGNTYGAVLAGNSFIETVKIASIRPDYTTINSFGSSLRIENCSGYSSTASSTIVIGDADYEGTISLKNSNIYSSEGVTHTQPAIDSSIAPKCRIELDEYFFNKRHYTGSRFAQVLGGVVALNNEEYFKAESLGGTSIAPSGSNLHFQNTYGSTRYSRNRTDWNSTTGVYTVPSYGISRLEINLNVGSPTDLDGTVQVIVNGSSKYTFYPVNGKINFSCVLSDLEAGDTINFLATPTGTLNFGASALDYLVLSAIL
Physico‐chemical
properties
protein length:534 AA
molecular weight: 56861,33830 Da
isoelectric point:5,12576
aromaticity:0,09363
hydropathy:-0,11854

Domains

Domains [InterPro]
DC_1199
STR
1–532
DC_1199
IPR012334
STR
24–467
IPR012334
IPR011050
STR
41–461
IPR011050
IPR024535
ENZ
43–128
IPR024535
AUS02986.1
1 534
Architecture
STR
STR 1-532 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AUS02986.1
1 534
Domain Start End Length (AA) Confidence
N-terminal 1 57 57 0,9540
Central domain 58 395 339 0,9795
C-terminal 396 534 138 0,9812
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-57
Central
58-395
C-terminal
396-534

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 2.275.O._10N.286.54.E11
[NCBI] 		1881285 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio cyclitrophicus
[NCBI] 		47951 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AUS02986.1 [NCBI]
Genbank nucleotide accession
MG592671 [NCBI]
CDS location
range 246845 -> 248449
strand -
CDS
ATGACTACTAAGGTAAATTTTAGAAACACAGAGGGGCTTCTACCAGAAGCTTCACTAAGCAATAGTTCAGTGATATCGACAGGAAGCACTGATTCACGAACATTGGAAGATCGGTTTTCTGATGTAGTGAATGTGAAAGACTTTGGCGCAGTAGGAGACGGCGTTACTGATGATACTGCTGCTATTCAGGCAACTTTTGAGTACGTTAGTAATATACACGGAACAAGCCGTCCTACTAGTATATATTTTCCATCAGGGACTTATAACTTTACTACAATAACAATCAATGACCTTTATGATATGACTATTAACTTTAATGGTGCGTTATTGAAAGCAAACTCTGAAGTAGTGCTAAGTCACGCTATTCGTTTTCAGAACTATAACAACATCAAGTTATTAAACCTTGGTGCACTTTATACAACACGACGTGCTAACTACACATATGGTATTCGTTTTGCAGCAGGTCCAGGTGGATCGATAGACCCTACTAACGGATTAGGCAAGGAGATGGCGATGACATCTGGGACTATATTACGCTTCGCGCGAGGTATAGATGTAGGGACAGATACTATAGAAGTAAACATGGGTCAGAACTCTTTCACCAACGTGCATATTAAAGAATGTGGCTTAGGCCTGGCATCACGTGGTTCACAGACTATTGTCTCGTTTGCTGGTGGTTCTACTGGTGGTGCAGAGCACAGTGACTTCAATCTTCCTGAAAGAGACATTGCAGGTGTTGCAGCTTATGGTGGTGTAGTAGCCCTAAGTAGTTCAGAAATCCTTAAAACATCTGGAGCAGGTAGAGGTATTATAATTTCTAATTGTGATAACCCTACCTATGGTAATACATATGGTGCTGTTTTAGCAGGTAACTCTTTTATTGAAACTGTAAAAATAGCAAGCATTAGACCTGACTACACTACTATTAACTCGTTTGGTTCTTCGTTGCGTATAGAAAACTGTTCTGGCTATAGTTCAACTGCAAGCTCAACTATTGTTATTGGTGATGCTGATTACGAAGGGACTATATCCTTAAAGAACTCTAACATTTACAGTTCAGAAGGTGTCACCCACACACAGCCAGCAATAGATTCATCTATTGCTCCTAAATGTAGAATAGAACTTGATGAATACTTCTTCAATAAACGTCATTATACAGGTAGTCGCTTTGCACAAGTCCTGGGTGGTGTGGTAGCATTAAACAACGAAGAATACTTCAAGGCTGAGTCTCTAGGCGGGACATCCATAGCCCCATCTGGTAGTAATCTACATTTTCAGAATACTTATGGTTCTACAAGATATTCTCGTAATAGAACGGACTGGAATAGCACGACTGGTGTATACACTGTTCCAAGTTACGGTATATCAAGACTAGAGATCAATCTTAATGTAGGTAGCCCAACTGACCTTGATGGAACAGTCCAGGTTATAGTGAATGGTTCAAGTAAGTATACATTTTACCCAGTGAATGGCAAGATAAACTTTTCTTGTGTGTTGAGTGATTTAGAAGCAGGAGATACTATAAACTTCTTAGCAACTCCTACTGGAACACTTAACTTCGGAGCAAGCGCTTTGGATTACTTAGTTCTTTCTGCAATCTTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8fc2716b2e229f889a389be03beb45e826472a1970d72b0e25839b07d6701033
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7622
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank