Protein

View in Explore
Genbank accession
YP_006906381.1 [GenBank]
Protein name
membrane protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAYGVQITPSTGKPYTFTEDTMFVYLAAAGQTNSIGQHYNTGYVPPPGYDIVVIVPTSLSHTPDTPSSYITHYINNAGQVVLHIIPDYIRNTYILRGTYWYILLVPKLDVKTSSYGISILGGNRYTELSDGTKVTTCVYYGDVTVYTGWHPRNVLPSFNDSTHLCFYYYEGDYAMIGTDNGSLRFMDWNGYYNHGRSWPAKVVILSRTTLRATSSGINIWAKNGDVVFNSSDMQVGTGKIITNPSDTFTFSIPGINRPMFLPERCAKNGPVEYWRASKGNQLTANGVNWGYASPFMTLDFAQSIFIDADNYFNF
Physico‐chemical
properties
protein length:314 AA
molecular weight: 35133,06340 Da
isoelectric point:6,36082
aromaticity:0,14968
hydropathy:-0,19299

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_006906381.1
1 314
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,8818
Central domain 11 209 200 0,0088
C-terminal 210 314 104 0,9949
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-314

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage My1
[NCBI] 		1204539 Uroviricota > Caudoviricetes > Demerecviridae > Myunavirus > Myunavirus My1
Host Pectobacterium carotovorum subsp. carotovorum
[NCBI] 		555 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Pectobacterium

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_006906381.1 [NCBI]
Genbank nucleotide accession
NC_018837 [NCBI]
CDS location
range 84551 -> 85495
strand -
CDS
ATGGCATACGGTGTTCAAATAACTCCTAGTACGGGTAAACCTTATACTTTTACGGAAGATACAATGTTTGTATACTTAGCAGCTGCTGGGCAAACGAACAGTATAGGTCAGCATTATAATACAGGATACGTACCCCCACCGGGGTACGATATTGTTGTTATAGTTCCTACTTCCTTATCTCATACACCGGATACTCCTTCTTCTTATATAACTCACTACATAAATAACGCAGGACAAGTGGTACTACATATTATACCAGACTATATTAGGAATACTTATATTCTTAGGGGTACTTACTGGTATATCCTATTGGTACCTAAGTTAGATGTAAAAACATCGTCTTATGGTATAAGTATATTAGGAGGTAATCGCTACACAGAATTATCTGATGGAACCAAGGTAACTACTTGTGTATACTATGGAGATGTAACAGTGTACACTGGATGGCACCCTAGGAATGTATTACCAAGTTTTAATGATAGTACGCACTTGTGTTTTTACTACTATGAAGGTGACTACGCAATGATAGGAACAGATAATGGTAGTTTACGATTTATGGATTGGAATGGTTACTATAACCATGGTAGGAGCTGGCCTGCAAAGGTAGTAATACTATCAAGAACTACATTAAGAGCTACTAGTTCTGGTATTAATATATGGGCTAAGAATGGTGATGTAGTATTTAACTCTTCAGACATGCAGGTAGGTACAGGTAAGATTATAACAAACCCTTCGGATACATTTACTTTTAGTATACCTGGTATTAATAGACCTATGTTTTTACCAGAACGTTGTGCTAAGAATGGCCCTGTTGAATATTGGAGAGCCAGTAAGGGCAACCAATTAACAGCTAACGGAGTTAACTGGGGGTACGCGTCGCCTTTTATGACCCTAGACTTCGCTCAGAGTATTTTCATAGACGCAGATAATTACTTTAACTTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9de11fc5587f450081f04042c12dcb0f725576836593267289168771732ac7c9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7191
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50