Protein

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Genbank accession
YP_008125901.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence RBPdetect
Probability 0,86
Protein sequence
MSVVFDPHGTVAENVQTKEAQTLPATGPRLIFPTHGPYYTDLEFKLFDGTKELQEQVHYYKVLPYATGVLRTARRIHGAILVIDDSVSRALTVTYHPVGINAATAAQKTAFIAGNTVFTDKYWEDVVGDPYFPPVDIQFDWDNWCGERELMDALGVLAEGLKYKPPKKDPLTVTTAQGYVQDYSHGGVRFDAPTGRHAFTNNSDYRFDFGSYSGFAVSDYLYTCEFYLPGMQTATAANFSIFFNNSWSSNFVDCRLIYDYATQKFKVTLNRRENSAYTSWEIASFAFPKAKFAKAFKVRISRNRAQNGFELYISNADGIIGKLVYNHNNPPASLLNVYTNYGIAARLAGATDIRTSVGVKLNGYMQIIDCPGFEADISEDTLGLLKTWYNLLRASFDQAPAHDHILRKDNPHDEEAGWIGALVRNGISADAVRAYGRTLPQLTTYVNSLAPTQNSLLSKVRREVSSRLLKGTIVGVEGLTQFTQGSDANNIRILAKFDKLQSWLIARNDNVSVTAAQYIDIKSGTGVLRLYNDARGLTWNNAKLLTHDTIGPYIPQGGAAALGFVGVSTATITLTGKGIGSNPFVATWQAPSAADVNTLAMRLVTDDFGTSSALAATPALIAKLAANFTGKLLKDKANINGIKLAGSITLSKSMYGLSEVVDISDILMPMSDAMEALIADYEDNPNHTHPASMFGITTATTTVKGTVKLGGIENDNTVVLDGREVLEQKARLDQVDTLSSDTMTPAVINILRYGTSGAGFVEGVEFEDFMVSIPANFYYCGDRRAVPAVSYNLIDLFPGAYTNKTFYLYVDVTSTGTAVHSISATRRQENDTLTEIGEVTTDGDTIYRANVYNVTRLGNFREFEEHVENPSAHIEKVADKNSLGLSSVRNIPASISNYKVGFTNGIRDWQGIFGNASWTQTGQQLMFASYGTGQNAVIGLAHSQKQADYTMRGTISTDSTADNGGWLGWLLAYRKVKTEEHTLSVIANPDVGGWANDSGQPVIHAVVIDAGKGTQIVVPGVTGRSTTQKLSQLVVKPATITRVGNVFTVQLGAVSSLDAISDTFVIDLDALTVTASNSNGQSKMTQLGPLLRSKGIATDFFHGSVLTGVLGLYKSKSTYTFQLHPAVDNTKLYSTLGSLVDNVSPLGKVRVAKGTLTSATLAQSALEAQVGTPVLPTLDGRGIKYSAINCSYYSLNTAYTMLMVRSTK
Physico‐chemical
properties
protein length:1208 AA
molecular weight: 131168,32020 Da
isoelectric point:6,36622
aromaticity:0,09603
hydropathy:-0,12409

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_008125901.1
1 1208
Domain Start End Length (AA) Confidence
N-terminal 1 320 320 0,4978
Central domain 321 519 200 0,2006
C-terminal 520 1208 688 0,2333
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-320
Central
321-519
C-terminal
520-1208

Taxonomy

  Name Taxonomy ID Lineage
Phage Cronobacter phage CR5
[NCBI] 		1195085 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Cronobacter sakazakii
[NCBI] 		28141 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008125901.1 [NCBI]
Genbank nucleotide accession
NC_021531 [NCBI]
CDS location
range 148089 -> 151715
strand -
CDS
ATGTCTGTCGTGTTTGATCCACATGGGACAGTAGCGGAAAACGTGCAGACAAAAGAAGCACAAACTCTGCCTGCTACCGGCCCGCGACTTATTTTCCCGACTCACGGTCCGTATTATACCGACCTCGAGTTTAAGCTTTTCGATGGTACAAAAGAACTCCAAGAGCAGGTGCACTATTATAAAGTGTTGCCGTACGCCACCGGGGTGCTGCGTACAGCTCGCCGTATTCACGGCGCTATTTTGGTTATTGACGACTCAGTTTCCCGTGCATTGACAGTGACCTACCATCCAGTAGGTATTAATGCTGCTACGGCAGCACAAAAAACTGCTTTTATTGCCGGGAATACCGTCTTCACTGATAAATATTGGGAAGACGTCGTCGGTGACCCGTATTTTCCACCGGTAGATATCCAGTTTGATTGGGATAACTGGTGCGGTGAACGTGAGCTGATGGACGCCTTAGGTGTGCTGGCCGAAGGGCTGAAATATAAGCCGCCTAAGAAAGACCCGTTAACCGTCACTACTGCGCAAGGTTACGTGCAGGATTATTCACACGGCGGTGTGCGTTTTGATGCCCCTACCGGCAGACACGCCTTTACTAACAACAGTGATTATCGTTTCGACTTTGGTAGTTACTCAGGCTTTGCAGTGTCCGACTACCTGTATACTTGCGAGTTCTATTTACCGGGTATGCAAACGGCGACCGCTGCCAACTTCAGCATCTTCTTCAATAACAGTTGGTCTTCTAACTTCGTTGATTGCCGCCTGATTTACGATTATGCCACTCAGAAGTTCAAAGTGACTTTGAACCGTCGTGAGAATAGCGCGTATACATCGTGGGAAATTGCCTCTTTTGCTTTCCCAAAAGCAAAGTTTGCCAAAGCGTTTAAAGTGCGTATCTCGCGCAACCGTGCGCAGAACGGGTTTGAGTTGTACATTAGTAATGCGGATGGCATCATCGGTAAACTTGTGTATAACCACAATAACCCGCCTGCTTCTCTGTTGAATGTGTACACCAATTACGGTATTGCTGCGCGCTTAGCAGGGGCCACCGATATCCGCACTTCGGTTGGCGTTAAACTCAACGGGTACATGCAGATCATCGACTGTCCCGGGTTCGAAGCGGATATTTCCGAAGACACATTGGGTCTTCTAAAGACGTGGTATAACCTGCTGCGGGCAAGCTTCGACCAAGCCCCTGCACACGACCACATTTTGCGTAAAGACAACCCGCATGACGAAGAAGCTGGTTGGATTGGTGCGCTGGTTCGTAACGGTATCTCTGCTGACGCTGTCCGTGCTTACGGACGAACGCTGCCACAGCTGACAACCTACGTTAACAGCTTAGCGCCGACGCAGAACTCCCTGTTGTCTAAAGTGCGTCGTGAAGTCTCTAGCCGTTTACTGAAAGGGACTATCGTTGGCGTCGAAGGCTTAACGCAGTTCACGCAAGGGTCGGATGCAAACAACATTCGTATTCTGGCGAAGTTCGATAAGCTGCAGTCTTGGTTAATTGCACGGAACGACAACGTCTCAGTAACGGCTGCGCAGTACATCGATATCAAATCCGGTACGGGCGTGTTGCGTCTGTATAACGACGCACGCGGTTTAACGTGGAACAATGCTAAACTACTCACTCACGACACCATCGGGCCGTATATCCCTCAAGGGGGCGCTGCAGCACTTGGTTTCGTGGGCGTGAGCACAGCAACCATTACCTTAACGGGTAAAGGTATCGGGTCTAACCCGTTTGTTGCGACTTGGCAAGCGCCAAGCGCTGCGGATGTCAACACGTTAGCGATGCGTCTGGTGACAGATGACTTCGGAACCAGCTCTGCGCTGGCGGCTACACCTGCGTTGATTGCGAAGCTGGCTGCGAACTTCACAGGTAAGCTTCTCAAAGACAAAGCGAACATTAACGGCATTAAACTGGCCGGTTCTATTACGCTGTCGAAGTCAATGTACGGGCTGTCTGAGGTTGTTGATATTTCGGACATCCTGATGCCGATGTCAGATGCGATGGAAGCGTTAATCGCCGACTACGAGGACAATCCAAACCACACCCACCCGGCGAGTATGTTCGGTATTACTACCGCAACTACCACGGTCAAAGGTACGGTTAAACTCGGCGGTATTGAGAACGACAACACCGTTGTTCTTGATGGTCGTGAGGTGCTGGAGCAGAAAGCACGTTTGGACCAAGTCGACACGTTATCTTCGGATACGATGACACCTGCCGTAATCAACATCCTACGTTACGGCACGTCCGGCGCAGGGTTTGTCGAAGGCGTGGAATTCGAAGACTTCATGGTCTCTATCCCTGCGAACTTCTACTACTGCGGTGACCGTCGTGCTGTACCTGCAGTGTCGTACAACCTGATTGACCTGTTCCCTGGGGCGTACACAAACAAAACTTTCTATCTCTACGTTGATGTGACTTCAACCGGTACGGCAGTGCACTCTATCAGTGCGACACGCCGTCAGGAGAACGACACGTTAACCGAGATTGGCGAAGTGACAACGGACGGTGACACCATTTACCGTGCTAACGTCTACAACGTCACACGTCTGGGTAATTTCCGCGAGTTCGAAGAACACGTAGAGAACCCGAGTGCGCACATTGAGAAAGTGGCAGACAAAAACAGTCTGGGCCTTTCCAGCGTTCGGAATATCCCTGCATCTATCAGTAACTATAAAGTTGGGTTCACCAACGGTATTCGTGACTGGCAGGGTATCTTCGGTAATGCGTCGTGGACACAGACCGGGCAGCAGTTGATGTTTGCCAGCTACGGTACTGGGCAGAACGCGGTCATCGGTTTGGCCCACTCCCAGAAGCAGGCCGATTACACCATGCGTGGTACAATCTCCACCGATAGCACTGCCGACAATGGCGGATGGTTAGGTTGGCTGTTGGCTTACCGGAAAGTGAAGACCGAGGAGCATACCCTTTCGGTCATTGCAAACCCGGACGTTGGGGGTTGGGCAAACGACTCTGGGCAGCCGGTTATCCATGCCGTCGTTATCGATGCGGGGAAAGGTACGCAGATTGTTGTTCCCGGTGTCACTGGTCGCTCAACCACCCAGAAGCTCTCTCAGTTGGTTGTCAAACCTGCAACAATTACTCGTGTGGGTAATGTGTTCACGGTTCAGCTCGGTGCGGTCAGTAGCTTGGATGCGATTTCGGATACGTTCGTCATCGACCTTGATGCGTTAACTGTCACTGCAAGTAACAGCAACGGTCAAAGTAAAATGACTCAGCTGGGGCCGTTGTTGCGCTCCAAAGGCATCGCTACCGATTTCTTCCACGGTAGTGTGCTGACAGGTGTATTGGGCCTGTATAAGTCGAAAAGCACCTATACGTTCCAGTTACATCCTGCGGTTGACAACACTAAGCTGTACAGCACGCTGGGAAGTCTTGTGGACAACGTTTCGCCGTTAGGTAAGGTTCGTGTGGCGAAAGGCACACTGACCTCTGCTACGCTTGCGCAGTCAGCTCTTGAGGCACAAGTGGGTACACCGGTTCTTCCAACTTTGGATGGGCGGGGTATCAAGTATTCCGCTATTAACTGTTCTTATTACTCACTTAATACCGCGTACACCATGCTGATGGTGCGCTCGACGAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9e34a536fe48dd02b89d910181e5622942437cfb181e3e9e8febcdbe2794cb7b
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2781
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Cronobacter sakazakii Bacteriophage CR5 Shin,H., Lee,J.-H., Kim,Y. and Ryu,S. 2012-06 — GenBank