Protein

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Genbank accession
YP_009323880.1 [GenBank]
Protein name
base plate tail tube protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MYYSLMRESKVIVEYDGRAYHFDALSNYDINTSYEEFKTLRRTIHRRTNYADSIINAQTPSSISLAINFSNTLTEANFFEWMGFDREGNTFLLPLYGTNIEPTMFNIYIVNKDNNCVYFENCYVSTVDFSLDKSVPILNVGIESGKFSEVSTFTPAGSIVQGEVMSYSPPRVSTNSNVLPALLSASMSFQQQCSWREDKSVFDINKIYNNKRAYVNEMNASATIAFYYTKRFAGDMFYNIEPETDIPLTIRNEHISIDFPSARITKRLQFSDIYRVEWDVIPTADSDPVRIDFFGEIKK
Physico‐chemical
properties
protein length:299 AA
molecular weight: 34472,31620 Da
isoelectric point:4,97798
aromaticity:0,14047
hydropathy:-0,30736

Domains

Domains [InterPro]
IPR056389
ATT
1–298
IPR056389
YP_009323880.1
1 299
Architecture
ATT
ATT 1-298 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009323880.1
1 299
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,9075
Central domain 11 209 200 0,0757
C-terminal 210 299 89 0,5522
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-299

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage 118970_sal2
[NCBI] 		1813782 Uroviricota > Caudoviricetes > Demerecviridae > Epseptimavirus > Epseptimavirus 118970sal2
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009323880.1 [NCBI]
Genbank nucleotide accession
NC_031933 [NCBI]
CDS location
range 100696 -> 101595
strand -
CDS
ATGTACTACTCTCTAATGAGGGAGTCAAAAGTTATAGTTGAGTATGATGGCAGGGCTTATCATTTTGATGCCCTGTCAAATTACGATATCAATACGTCCTATGAGGAATTTAAAACTCTTCGTAGGACTATCCATCGTAGAACCAACTATGCTGACTCTATTATTAATGCACAAACTCCATCTTCAATATCGCTGGCTATAAATTTTAGTAATACCCTTACTGAAGCTAACTTCTTTGAATGGATGGGCTTTGACCGAGAGGGTAACACATTCTTACTACCACTTTATGGTACAAATATTGAGCCAACAATGTTCAATATATACATAGTTAATAAAGATAATAACTGTGTGTACTTTGAGAATTGCTACGTATCTACTGTAGACTTTTCTCTAGATAAAAGCGTTCCTATTCTAAACGTAGGAATTGAATCTGGTAAGTTCTCTGAGGTGTCTACTTTTACTCCTGCTGGTTCTATTGTTCAGGGTGAAGTTATGTCATATAGTCCTCCTAGAGTATCTACTAACAGTAACGTTTTACCGGCTCTTTTATCCGCTTCTATGTCATTCCAGCAACAATGTTCTTGGAGAGAAGATAAAAGCGTATTTGACATAAACAAAATATATAATAATAAGAGAGCTTATGTTAATGAGATGAATGCTTCGGCAACAATTGCATTTTACTACACCAAGCGATTTGCTGGTGATATGTTTTATAATATTGAACCCGAAACTGACATACCATTAACCATCCGAAATGAACATATTTCGATTGATTTTCCTTCAGCACGTATAACAAAACGCCTACAATTCTCGGATATATACAGAGTTGAATGGGATGTAATCCCTACTGCAGACTCTGATCCGGTAAGAATCGACTTCTTTGGAGAAATAAAGAAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
8b8fe0d8f64dd9787d74bddea9211cbbfdad0329f1497ad4837515b133f1c27f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8374
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequences of three Siphoviridae Bacteriophages infecting Salmonella enterica enterica subsp. Enteridis Paradiso,R., Lombardi,S., Iodice,M.G., Riccardi,M.G., Orsini,M., Bolletti Censi,S., Galiero,G. and Borriello,G. 2016-12-29 — GenBank