Protein

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Genbank accession
YP_009845617.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,81
Protein sequence
MADVQTRPDNDIFASSAGTGELLPFGDLARGWGATLGYSDGIPPMEWFNFIGNRTDKGIHYILQQGVDVWVATETYPVGALVKVNANNMLYRCLVQNINMAPANNPTQWRPVLDLTAASAAAKQVGKASGNVIQVGSFGLGGNAELVTNASSITNDGLYQLTATGVGGPESGTACEILHMQIDANNATQWATPYNKRILYIRNKVNGTWNTWEGQYGPSNRPNASDLNINQDFIPMDGSDSIRGNMGTVGWVHIARTTSDLFRAANTAGVAVHEVSGNVAGGTAVTEYLTSVSVSANSNVITAARWGSVPMTHIQHLLVSGGATQINLAVSRAGGIADRRIAALSVDGANNRVTTLNSFTLCENGTRVYSPNNPQPVDLSSVVNSVRLGAEVTNARNGGESFVLRMPSGHAATGFDIYSKGGREDEFRNVFSRPIQILVNGSWFTVGQV
Physico‐chemical
properties
protein length:449 AA
molecular weight: 47705,68620 Da
isoelectric point:5,98807
aromaticity:0,07572
hydropathy:-0,14766

Domains

Domains [InterPro]
DC_0043
STR
1–449
DC_0043
cd19958
STR
147–213
cd19958
YP_009845617.1
1 449
Architecture
STR
STR 1-449
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009845617.1
1 449
Domain Start End Length (AA) Confidence
N-terminal 1 128 128 0,9765
Central domain 129 327 200 0,0694
C-terminal 328 449 121 0,9865
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-128
Central
129-327
C-terminal
328-449

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SE4
[NCBI] 		2575328 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009845617.1 [NCBI]
Genbank nucleotide accession
NC_048764.1 [NCBI]
CDS location
range 23253 -> 24602
strand -
CDS
ATGGCTGATGTACAGACAAGACCGGATAATGATATTTTCGCCAGTTCCGCAGGTACTGGTGAACTATTACCGTTCGGTGACCTTGCTCGTGGTTGGGGTGCGACCCTGGGCTATTCAGACGGTATTCCACCGATGGAGTGGTTTAACTTCATTGGTAACCGTACTGACAAAGGCATCCATTATATCCTGCAGCAAGGTGTTGACGTTTGGGTTGCTACTGAGACTTATCCGGTAGGTGCTCTTGTCAAGGTCAATGCTAACAACATGCTTTATCGTTGTCTGGTGCAGAACATTAACATGGCTCCGGCTAACAACCCTACCCAGTGGCGCCCTGTGCTAGACTTGACGGCCGCATCTGCTGCTGCCAAGCAAGTTGGTAAAGCATCAGGTAACGTTATCCAGGTAGGTTCGTTCGGTCTTGGCGGCAATGCTGAGCTTGTTACAAACGCATCGTCTATCACGAACGATGGTCTGTACCAGTTGACTGCTACAGGTGTAGGTGGTCCTGAATCAGGTACTGCTTGCGAGATTCTGCACATGCAGATTGACGCAAACAACGCAACACAATGGGCCACTCCTTACAATAAGCGAATTCTGTATATTCGCAATAAAGTTAATGGTACGTGGAACACCTGGGAAGGTCAGTATGGACCAAGCAACCGTCCTAATGCTAGCGACCTGAACATCAACCAGGACTTCATTCCTATGGATGGTTCTGACTCTATCCGTGGTAACATGGGTACTGTAGGTTGGGTTCACATCGCACGTACAACGTCTGACCTGTTCCGTGCTGCTAACACTGCCGGTGTGGCTGTTCATGAAGTATCAGGTAACGTCGCAGGTGGTACTGCCGTTACTGAATACTTGACGTCAGTATCTGTGTCGGCTAACAGTAATGTCATTACAGCTGCTCGCTGGGGTTCAGTACCTATGACTCACATCCAGCACCTTCTGGTGTCTGGTGGTGCTACGCAAATCAACCTGGCAGTTTCTCGTGCAGGTGGTATTGCAGACCGACGTATTGCTGCTCTGTCAGTTGACGGTGCTAACAACCGTGTAACTACATTAAATAGCTTTACTTTGTGTGAAAATGGGACTAGAGTATACTCACCAAATAACCCTCAGCCTGTCGACTTATCGAGCGTTGTAAACAGCGTTCGACTGGGTGCTGAAGTTACGAATGCCCGAAACGGTGGTGAGTCATTCGTGTTGCGTATGCCTTCTGGTCATGCTGCAACAGGTTTTGACATCTACTCTAAAGGCGGTCGTGAGGATGAGTTCCGTAACGTGTTCTCTCGTCCAATTCAGATTCTCGTTAATGGCAGCTGGTTCACTGTAGGACAAGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
06250c463d22473c3bdeb577d2d8219fff9f8dfa459ae684274199f1cc3052e1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6617
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Salmonella bacteriophage diversity and host specificity revealed by physiological characterization and whole genome sequencing Fong,K., Wang,S., Delaquis,P., Tremblay,D., Moineau,S., Levesque,R. and Goodridge,L. 2019-09-14 — GenBank