Protein

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Genbank accession
UGL61090.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,64
Protein sequence
MGLVSQSVKNLKGGISQQPDILRFSNQGALQVNGWSSETQGLQKRPPTTFTKRLQNKGFLGAKPLVHLINRDAQEQYYVGFSGTGLAVWDLKGNNYTVRGYNGYANCANPRTDLRLITVADYTFVVNRNVVCQMGSTLTNAGYPRLDGRALINVRGGQYGRTLSITINGDGTGSSPQASIKMPNGSAEKVPAGDPYAGMNQVDMTDASWIAGELARQLQVTLGPSGWSFQAGTGWILITAPANDNVRQIATKDGYADQLLSGFIYQVQTFTKLPANAPPGYLVEITGESARSGDNYWVQYDASGKVWKETAKPKIIAGFNNATLPHALVRAADGQFDWTPLTWDGRNAGDDDTNPMPSFIGSSINDVFFFRNRLGFLSGENVVMSRTSKYFNFFPSSVATLSDDDPIDVAISHNRISILKYAVPFSEQLLLWSDQAQFVLSSNGILSSKTIELDLTTEFDVSDGARPYGIGRGVYFAAPRASFTSLKRYYAIQDVSNVKSAEDVSAHVPSYIVNTVHAIHGSGTENFVSVLSDGAPNRVYIYKFLYLDEVLQQQSFSHWEFGGNTTVLAAACIGSYCYLMLDRPEGLCLERIEFTQHTIDFSIEPYRCYMDMKKVVTLGAYNPDTNLTSFDVRTAYGGTPDPDAVFFLIDQQGVLQEFSSTNWATNPYISFQGNRAGEQMVIGKQYQFQYEFSKFLIKQTADDGPTSTEDIGRLQLRRAWLNYEESGAFEINVNNGSSEFIYSMIGGRLGIAKTLGELSVGTGQFKFPVTGNAVNQRVTITSDNPNPLNVIGCGWEGNYIRRSSGI
Physico‐chemical
properties
protein length:806 AA
molecular weight: 88564,13150 Da
isoelectric point:5,58087
aromaticity:0,11290
hydropathy:-0,26278

Domains

Domains [InterPro]
IPR058003
TTP
1–806
IPR058003
UGL61090.1
1 806
Architecture
TTP
TTP 1-806
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UGL61090.1
1 806
Domain Start End Length (AA) Confidence
N-terminal 1 143 143 0,9909
Central domain 144 342 200 0,2604
C-terminal 343 806 463 0,1544
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-143
Central
144-342
C-terminal
343-806

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Eir4
[NCBI] 		2900147 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas syringae pv. tomato str. DC3000
[NCBI] 		223283 Pseudomonadota > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas > Pseudomonas syringae group genomosp. 3

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UGL61090.1 [NCBI]
Genbank nucleotide accession
OL581611 [NCBI]
CDS location
range 24789 -> 27209
strand +
CDS
ATGGGACTCGTTTCGCAATCCGTCAAGAACCTCAAAGGAGGTATCTCGCAGCAACCGGACATCCTTCGGTTCAGCAACCAAGGCGCTCTGCAAGTCAATGGCTGGTCGTCCGAGACCCAAGGACTTCAGAAGCGTCCACCAACCACCTTCACCAAGCGTCTCCAGAACAAGGGGTTCCTCGGGGCCAAGCCTCTGGTTCATCTCATCAACCGGGATGCCCAAGAGCAATACTATGTGGGCTTCTCTGGGACTGGCCTTGCAGTCTGGGACTTGAAGGGCAACAACTACACCGTGCGTGGCTACAACGGTTACGCCAACTGCGCCAACCCTCGAACCGACCTGCGCCTCATCACCGTGGCCGACTACACCTTCGTGGTCAACCGCAACGTCGTCTGTCAGATGGGATCGACCCTGACCAATGCGGGCTACCCAAGGCTGGACGGTCGTGCGCTCATCAACGTGCGTGGTGGTCAGTATGGTCGAACCCTGTCGATCACAATCAACGGTGACGGTACTGGGTCGAGTCCTCAAGCATCCATTAAGATGCCCAACGGTTCCGCCGAGAAGGTGCCTGCTGGTGACCCATACGCTGGCATGAACCAAGTCGATATGACTGACGCATCGTGGATCGCTGGTGAGCTTGCGCGGCAACTTCAGGTGACCCTCGGGCCTTCTGGGTGGTCGTTCCAAGCAGGCACCGGGTGGATTCTCATCACGGCCCCGGCCAACGATAACGTCCGTCAGATCGCAACCAAGGATGGCTACGCTGACCAGTTGCTCAGTGGGTTCATCTATCAGGTTCAGACCTTCACGAAGCTCCCTGCGAACGCCCCACCGGGTTACCTCGTGGAGATCACTGGTGAGTCTGCCCGCTCGGGTGACAACTACTGGGTTCAATACGACGCCTCTGGGAAGGTCTGGAAGGAAACAGCGAAGCCCAAGATCATCGCAGGGTTCAACAACGCAACGCTCCCACACGCGCTCGTGAGGGCCGCTGACGGGCAGTTCGACTGGACACCTCTGACGTGGGATGGACGCAACGCTGGCGACGATGACACGAACCCAATGCCGTCCTTCATCGGTTCCTCGATCAACGACGTGTTCTTCTTCAGGAACCGTCTGGGCTTCCTCTCGGGCGAGAACGTGGTCATGTCGCGTACCTCGAAGTATTTCAACTTCTTCCCGAGCAGCGTGGCGACCCTGAGCGATGACGACCCGATTGACGTGGCTATCTCGCACAACCGTATCTCGATCCTGAAGTACGCTGTGCCGTTCTCCGAGCAGCTCCTACTGTGGAGCGATCAGGCTCAGTTCGTTCTGTCGAGCAACGGCATCCTGTCGAGCAAGACCATCGAGCTGGACTTGACCACTGAGTTCGACGTGAGTGATGGAGCACGGCCCTATGGGATCGGTCGCGGGGTTTACTTCGCAGCACCACGGGCATCCTTCACGAGCCTCAAGCGGTACTACGCGATTCAGGACGTGTCCAACGTGAAGTCCGCTGAGGATGTCTCTGCGCACGTTCCGAGCTACATCGTGAACACCGTCCATGCAATCCATGGGTCGGGCACTGAGAACTTCGTGAGCGTCCTCTCAGACGGTGCCCCTAACCGGGTCTACATCTACAAGTTCCTGTATCTCGATGAGGTGCTCCAGCAGCAGTCCTTCAGTCACTGGGAGTTCGGTGGCAACACCACTGTTCTTGCAGCGGCCTGCATTGGCTCCTACTGCTACCTGATGCTCGACCGTCCAGAGGGCCTGTGCCTTGAGCGTATCGAGTTCACCCAGCACACCATCGACTTCTCCATTGAGCCGTATCGCTGCTACATGGACATGAAGAAGGTCGTGACCCTCGGTGCGTACAACCCAGACACCAACCTGACGAGCTTCGACGTTCGGACGGCCTATGGTGGAACGCCTGACCCTGATGCGGTCTTCTTCTTGATCGACCAGCAGGGCGTCCTTCAGGAGTTCTCATCGACCAACTGGGCGACCAACCCGTACATCTCCTTCCAAGGCAACCGCGCTGGCGAGCAGATGGTCATCGGGAAGCAGTACCAGTTCCAATACGAGTTCTCCAAGTTCCTCATTAAGCAAACCGCTGACGATGGGCCTACCTCGACCGAGGACATTGGACGCTTGCAGCTTCGTCGCGCATGGCTGAACTACGAGGAATCTGGTGCCTTCGAGATCAACGTCAACAACGGCTCCAGCGAGTTCATCTACTCGATGATTGGCGGGCGTCTGGGCATCGCAAAGACCCTCGGAGAACTCTCTGTGGGCACCGGCCAGTTCAAGTTCCCTGTGACGGGCAACGCGGTCAACCAACGAGTAACCATCACCAGTGACAACCCGAACCCACTCAACGTGATCGGCTGTGGCTGGGAAGGTAACTACATTCGCCGGTCTTCCGGTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
db79624d4eda656bb2b3024feb153d2d251e7ce1d177335f03cecf0bdbe6c5b2
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3148
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Pseudomonas phage Eir4 Korniienko,N., Kharina,A., Zrelovs,N., Jindrichova,B., Moravec,T., Budzanivska,I., Burketova,L. and Kalachova,T. 2020-09-06 — GenBank