Protein

View in Explore
Genbank accession
YP_013605205.1 [GenBank]
Protein name
putative baseplate hub protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,85
Protein sequence
MKKILDSAREYLRTNNKIKTACLITLELPSSTGSSSAYIYLTDYFRDVIYNGILYTSGKVKSITTHKQNRKLSIGSLSFTITGTAEDEVLKLVQNGVSFLDRSISIHQAVIDEEGNILTVDPDTNGPLLYFRGKITGGGIKDNIGTSGVSTSVITWNCSNQFYDFDRVNGRFTDDADHRGLEIVAGQLVPSNGAKRPEYQEDYGFFHANKSISILAKYQVQEERYKLQSKKKLFGLSRSYSLKKYYETVTKEVDLDFNLAAKFLPVVYGVQKIPGIPVFADTELHNPNIVYVVYAFCEGEIDGFLDFYFSDVPMICIDPNDSKSRTCFGTKKVAGDTMQRIASGQPSSEPSVHGQEYKYNDGNGDIRIWTYHGKADQSAADVLVNIAKEKGFYLQNMNENGPEYWDSRYKLLDTAYAIVRFTINENRTEIPEVSAEVQGKKIKIYHSDGRVTADKTSLNGIWQTLDYLTSDRYGANITIDQFPLQQLIQEAAILDIIDESYQVSWQPYWRYVGWTDAVGENRQIVQMNTILDTSESVFKNVQGLIESYGGAINNLSGQYRITVEKFSNTPLEIDFLDTYGDLELSDTTGRNKFNSVQASILDPALSWKTNSITFFNSIFKEQDKGLDKKLQLSFANITNYYTARSFADRELKKSRYSRTLTFSLPYHFIGIEPNDPIAFTYGRYGWNKKYFLVDEVENSREGKINITLQEYGEDVFINSEQVDNSGNDIPDVSNNVLPPRDFMYTPTPGGQVGSIGKNGELSWLPSLTNNVVYYSIVHSGHADPYIVQQLETNPNLRMIQEIIGEPAGLAVFEIRAVDINGRRSSPVTLSVELNSAKNLSVVSNFRVTNTASGDASEFVGPDVKLAWDRIPEEDIIDGIFYTLEIYDNLDRLLRSVRIEDQYVYDYLLIYNKADYALHNEDALGINRKLRFRIRAEGDNGEQSVDWASI
Physico‐chemical
properties
protein length:949 AA
molecular weight: 107221,67130 Da
isoelectric point:5,05744
aromaticity:0,11275
hydropathy:-0,40242

Domains

Domains [InterPro]
DC_0187
STR
229–948
DC_0187
IPR032876
ATT
594–696
IPR032876
YP_013605205.1
1 949
Architecture
STR
ATT
STR
STR 229-593 | ATT 594-696 | STR 697-948 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_013605205.1
1 949
Domain Start End Length (AA) Confidence
N-terminal 1 312 312 0,9434
Central domain 313 525 214 0,3129
C-terminal 526 949 423 0,0049
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-312
Central
313-525
C-terminal
526-949

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage KKP_3831
[NCBI] 		3027684 Uroviricota > Caudoviricetes > Demerecviridae > Epseptimavirus > Epseptimavirus KKP3831
Host Salmonella enterica subsp. enterica
[NCBI] 		59201 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Salmonella

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_013605205.1 [NCBI]
Genbank nucleotide accession
NC_133303 [NCBI]
CDS location
range 91576 -> 94425
strand -
CDS
ATGAAGAAAATTCTTGACAGTGCAAGAGAGTATCTAAGAACCAATAATAAAATAAAAACTGCATGCCTTATTACTCTTGAATTGCCAAGCTCTACCGGATCAAGTTCTGCGTACATTTATCTTACAGACTATTTTAGGGATGTAATTTATAATGGTATTCTTTACACATCTGGTAAAGTTAAGTCTATAACAACACATAAACAAAATAGAAAACTTTCCATTGGTAGCCTTTCTTTTACTATCACAGGTACTGCTGAAGATGAAGTATTAAAACTAGTCCAAAATGGTGTATCCTTCCTAGATAGATCCATCTCAATCCATCAAGCGGTTATTGATGAAGAAGGTAACATTCTTACTGTAGATCCAGACACTAATGGTCCTTTACTTTACTTCCGTGGTAAAATCACTGGTGGTGGTATTAAGGATAACATTGGTACTTCTGGAGTTAGTACATCTGTTATTACATGGAACTGTTCAAACCAATTCTATGACTTTGATAGAGTAAACGGACGTTTCACAGATGATGCTGACCATAGGGGACTTGAGATTGTTGCTGGCCAATTAGTTCCATCTAATGGTGCTAAACGACCTGAATATCAAGAGGACTACGGATTCTTCCACGCTAACAAGAGTATTTCTATTCTTGCTAAGTATCAGGTTCAGGAAGAACGTTATAAGTTACAATCTAAGAAAAAGTTATTTGGTCTTTCTAGAAGCTATAGCCTAAAGAAATACTATGAGACTGTAACTAAGGAAGTCGATCTTGATTTTAACTTAGCAGCTAAATTCCTTCCAGTAGTATACGGAGTTCAGAAAATTCCTGGAATCCCAGTATTTGCAGATACTGAACTGCATAACCCTAATATCGTATATGTAGTATACGCTTTCTGTGAGGGTGAGATTGATGGATTTCTAGATTTCTACTTTAGTGATGTACCAATGATCTGTATTGATCCTAATGATAGTAAGTCTCGTACTTGTTTTGGTACTAAGAAAGTAGCTGGTGATACCATGCAACGTATTGCTTCTGGTCAACCAAGCTCTGAACCTTCTGTTCATGGACAGGAATATAAGTATAATGATGGTAATGGCGATATCCGTATCTGGACTTATCATGGTAAGGCTGATCAATCTGCTGCTGATGTTCTAGTTAACATTGCAAAAGAGAAAGGTTTCTATCTACAGAACATGAATGAGAATGGACCAGAATACTGGGACTCTCGTTATAAACTGTTAGATACTGCTTATGCTATCGTTCGCTTTACTATTAATGAAAACAGAACAGAAATTCCAGAAGTTAGTGCTGAAGTTCAAGGTAAGAAGATTAAGATCTATCATTCAGATGGTAGAGTAACTGCTGATAAGACCAGCTTAAATGGTATATGGCAAACTCTGGACTACCTAACCTCTGATCGCTACGGTGCTAATATCACTATCGATCAGTTCCCACTCCAGCAACTTATTCAAGAAGCAGCTATTTTGGATATCATTGATGAATCCTACCAGGTTTCTTGGCAACCCTATTGGAGATACGTTGGATGGACTGATGCTGTAGGAGAGAATAGACAAATAGTTCAAATGAACACTATTCTCGATACCTCTGAGTCCGTATTTAAAAACGTGCAGGGATTAATAGAGTCTTATGGTGGTGCTATCAACAACTTATCTGGTCAATATAGAATAACTGTTGAGAAGTTCTCAAACACCCCATTAGAGATTGACTTCTTAGATACCTACGGTGATTTGGAGCTATCAGATACCACAGGTAGAAATAAGTTCAACTCAGTACAAGCCTCCATATTAGATCCTGCATTAAGCTGGAAGACTAACTCCATTACATTCTTTAACTCTATATTTAAGGAACAAGATAAAGGATTAGATAAAAAACTTCAGCTTTCTTTTGCAAATATCACTAACTACTATACTGCACGTAGCTTTGCAGATAGAGAACTGAAAAAGTCTCGTTACTCACGAACTCTCACATTCTCATTACCATATCATTTCATAGGCATTGAGCCTAACGATCCGATTGCTTTTACATATGGTCGTTATGGTTGGAATAAGAAATACTTCCTAGTTGATGAGGTTGAAAACTCTAGAGAAGGTAAGATTAATATTACACTGCAAGAGTATGGTGAGGATGTATTTATTAACTCCGAGCAGGTTGATAATAGTGGTAACGATATCCCTGATGTTAGTAATAATGTACTGCCTCCTAGAGACTTTATGTATACACCAACACCGGGTGGACAAGTAGGATCTATTGGTAAGAATGGTGAGTTATCTTGGCTTCCTAGCTTAACTAATAACGTTGTTTACTACTCCATTGTTCATTCTGGACATGCTGATCCTTACATCGTACAGCAATTAGAAACTAATCCAAATCTACGAATGATCCAAGAAATTATTGGAGAACCTGCTGGTTTAGCAGTCTTTGAGATTAGAGCTGTAGATATTAATGGTAGACGAAGTTCTCCTGTAACACTATCGGTAGAACTTAACTCTGCTAAAAACTTAAGCGTCGTTAGTAATTTCAGGGTTACTAATACAGCTTCAGGAGATGCATCGGAGTTTGTAGGACCAGACGTTAAGTTGGCCTGGGATAGAATTCCAGAAGAAGATATCATTGATGGAATCTTCTACACTCTCGAAATCTACGATAACCTAGATCGTTTATTAAGAAGTGTACGAATTGAAGATCAGTATGTCTACGATTATCTACTGATATACAATAAGGCAGACTATGCTCTTCATAACGAGGATGCTCTAGGTATTAATAGGAAGTTACGCTTCCGTATAAGAGCAGAAGGTGATAATGGCGAGCAATCTGTGGATTGGGCATCTATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
307d691abfe84b74ebdf93c014e3af7b7fb895ef50bc9e7112d32ec897113f10
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8172
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Newly Isolated Salmophages for Biocontrol of Salmonella in Ready-To-Eat Plant-Based Food Wojcicki,M., Swider,O., Srednicka,P., Ilczuk,T., Koperski,L., Shymialevich,D., Cieslak,H., Sokolowska,B. and Juszczuk-Kubiak,E. 2013 — GenBank