Protein

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Genbank accession
YAO58174.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,51
Protein sequence
MADVQTRPDNDIFASSAGTGELLPFGDLARGWGATLGYSEGIPPMEWFNFIGNRTDKGIHYILQQGVDTWVETETYPVGALVKVNADNMLYRCLVQNINMPPSANPTQWRPVLDLTAATAAARQVGKASGNVIQVGAFGLGGNAEVVTNANSIVNDGIYQLPASGTGGPTNGVETEILHINWDEKNASQWGRTKGKRVIAMREKVNNTWGEWSYSYGPDNKPTAAELGINQDFIPMDGSDSIRGNLGTVGWLHIARTTSDLLRAANSAGVGTVEYSGNIAGGTAVQELLTSVSVAANSNVVTAARWGSVPMSHIQHILVAGGATQINMAVCRPGGIADRRTVALQVDGLNSRVTTTNSFILCENGVRVYSPNNPQPIDTSAGNVRGIRLGARIAAGVSESTFYPGHVMTGWRFGNKKELRGGTYWSAPLQYYINGTWINVSNVS
Physico‐chemical
properties
protein length:444 AA
molecular weight: 47384,52700 Da
isoelectric point:6,32552
aromaticity:0,07883
hydropathy:-0,19707

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YAO58174.1
1 444
Domain Start End Length (AA) Confidence
N-terminal 1 225 225 0,7390
Central domain 226 424 200 0,0470
C-terminal 425 444 19 0,9993
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-225
Central
226-424
C-terminal
425-444

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_EcoM_SD286
[NCBI] 		3462929 Viruses > unclassified bacterial viruses >
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YAO58174.1 [NCBI]
Genbank nucleotide accession
PX226730.1 [NCBI]
CDS location
range 44646 -> 45980
strand -
CDS
ATGGCTGATGTACAAACAAGACCCGATAACGACATCTTCGCCAGCTCTGCGGGTACTGGTGAACTGCTGCCGTTCGGTGACCTTGCTCGAGGCTGGGGTGCAACCCTTGGCTACTCGGAAGGTATTCCTCCGATGGAGTGGTTTAACTTTATCGGTAACCGTACTGACAAAGGTATCCACTACATCCTTCAGCAGGGTGTTGATACATGGGTAGAAACTGAGACCTACCCGGTTGGTGCACTGGTTAAAGTTAACGCCGACAATATGCTGTACCGTTGTCTGGTGCAGAACATTAATATGCCACCGTCTGCTAACCCTACACAGTGGCGCCCTGTACTTGACCTGACTGCTGCAACTGCTGCAGCACGACAGGTTGGTAAGGCCTCTGGTAACGTAATCCAGGTCGGTGCATTTGGCTTAGGTGGCAACGCTGAGGTAGTTACTAATGCTAACAGCATTGTAAACGACGGTATCTACCAGCTTCCAGCGTCAGGTACGGGCGGACCTACTAACGGTGTTGAGACTGAGATTCTGCATATCAACTGGGATGAGAAAAACGCTTCACAGTGGGGACGCACCAAGGGTAAGCGCGTAATAGCCATGCGCGAGAAGGTTAATAATACCTGGGGCGAATGGTCGTACTCTTACGGGCCTGATAATAAACCTACAGCAGCTGAGCTGGGTATTAACCAGGACTTCATCCCTATGGATGGTTCTGACTCAATCCGCGGTAACTTAGGTACTGTTGGCTGGCTGCATATTGCACGTACTACTTCCGACTTGCTACGTGCTGCTAACTCCGCCGGCGTAGGTACTGTTGAGTACTCTGGCAACATCGCAGGTGGTACTGCTGTTCAGGAGTTGCTTACTTCAGTTTCTGTCGCGGCCAACAGTAACGTTGTCACTGCGGCTCGCTGGGGGTCTGTACCTATGTCGCACATCCAGCACATCCTTGTGGCTGGCGGTGCTACGCAGATTAACATGGCGGTATGTCGTCCTGGTGGTATTGCCGACCGCCGTACAGTAGCTTTACAGGTGGATGGTCTTAACAGCCGAGTAACTACCACAAATAGCTTTATTTTATGTGAGAATGGTGTTAGAGTATATTCACCTAACAACCCGCAGCCTATCGATACTTCAGCCGGTAACGTTCGGGGTATTCGACTCGGCGCTCGTATTGCAGCTGGTGTATCTGAGTCAACGTTCTACCCAGGCCATGTAATGACTGGCTGGCGCTTCGGCAATAAGAAAGAGCTGCGCGGTGGTACATACTGGTCAGCGCCGTTACAGTATTATATCAACGGCACTTGGATTAACGTAAGCAACGTATCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5d47b7662adc64aa73a47b78b39d4aa02961b7d20926c75bce74cacedb908aa0
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7303
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic analysis of Escherichia coli bacteriophages Lei,X., Pang,Z., Cao,S., Li,Y. and Si,Z. 2022 — GenBank