Protein

View in Explore
Genbank accession
YP_009790824.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,96
Protein sequence
MSSRDISTVATYRIDGSTVEFLIPFEYLSRKFVRVTLIGRDRKELVVNRDYRYVSATQIRTTKTWQVSEGYEFIELRRHTSATERIVDFKDGSILRAQDLNISTIQALHIAEEARGLAADTLGVNDDGNLDARGRKIVNVANPDSDRDAVNFRFLDGTEKSVTQTLAEVRRLKQDIDAKHTQVGQDTVEVRQAVVTTGQHKVASESARDRAETAASQAEQSANIASTKANQASQSEQNASTSASQASQSATKAEQEANKAQQAANEAIGGAIPNSKKSDDDNSSSSDTVATSYAVKKVRDFAEKQFSFITNLDGFRFLGQVESIEQLRTIKPTAHGQRILVKSYYKGGTTGGGEFVADLQDLTTADDGGSCFVVEENGGRWKRILGSEISAFDFGVIGDGVVDDSQSLNAFVKALSVYNIKGVLPKGTFLVYNRVEVTSGNNIHLRGAGIGLSVIKRVGFSGSTLRFYNLRGCILQDFSINGNEEASPGGGAGLDCANLTDSVIERIEAFDCANSGIWVISGKAEITNHNVHIRNCFSHDNKGSGIQIQGAKASGISQSRAIRCGLGGDSVSGIYFKVPVEDCYHSDNYAEDIIGAAFAVGSSFPGQKAKRLTFTNCRAIHTGYAFRLGAVEDVQVTNLTAFLRGEANNIHGSVGDGIRLELTAKRVSVKNASIFNVAKHRAAVRCVGQPSDNFIELSGFNIPQEGSIIVSFSENSRNNTVKVISQDKTGVIPDIHKGNNNTVIYGEKIVTQTAVVNQTGLLTLLNDSVRVVRLGVSTNNEITNGITQRNLSTISDSYDGHIISLQIVNDNHDIVLVNTGNIQLKGNVASLKLDYVMDCVSFIFTERLNKWCQL
Physico‐chemical
properties
protein length:854 AA
molecular weight: 92536,12610 Da
isoelectric point:6,38770
aromaticity:0,06674
hydropathy:-0,27986

Domains

Domains [InterPro]
DC_0264
STR
1–845
DC_0264
IPR005604
ATT
6–132
IPR005604 Coil IPR011050
IPR011049
STR
92–190
IPR011049 IPR012334
IPR006626
Unmapped
425–447
IPR006626 IPR006626 IPR006626 IPR006626
YP_009790824.1
1 854
Architecture
ATT
STR
ATT 1-132 | STR 133-845 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009790824.1
1 854
Domain Start End Length (AA) Confidence
N-terminal 1 404 404 0,9948
Central domain 405 748 345 0,9919
C-terminal 749 854 105 0,9787
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-404
Central
405-748
C-terminal
749-854

Taxonomy

  Name Taxonomy ID Lineage
Phage Pasteurella phage PHB01
[NCBI] 		2006930 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Wuhanvirus
Host Pasteurella multocida
[NCBI] 		747 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pasteurellales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009790824.1 [NCBI]
Genbank nucleotide accession
NC_047832.1 [NCBI]
CDS location
range 30702 -> 33266
strand +
CDS
ATGTCATCAAGAGATATCAGTACGGTTGCGACTTACAGAATTGATGGTTCTACCGTAGAGTTTCTGATTCCCTTCGAGTATCTTAGCCGTAAATTCGTTAGGGTCACTCTGATTGGTAGAGACCGAAAGGAACTTGTTGTAAATAGGGATTACCGTTATGTATCAGCTACCCAAATCAGAACAACTAAAACTTGGCAAGTCAGTGAAGGTTATGAGTTCATTGAATTACGTAGACACACAAGTGCAACCGAGCGTATTGTTGATTTTAAAGATGGTTCAATTCTTCGTGCGCAAGACTTAAACATTAGTACAATCCAAGCGTTACACATTGCTGAGGAAGCTCGAGGTCTAGCAGCCGATACCTTAGGGGTAAATGATGATGGGAATTTAGATGCTAGAGGTCGAAAGATTGTAAATGTGGCTAACCCAGATTCTGATCGAGACGCTGTTAACTTTAGGTTCCTCGATGGGACCGAGAAGTCAGTCACTCAGACCTTAGCGGAAGTCAGACGCTTAAAGCAAGATATTGACGCTAAGCATACACAGGTTGGGCAAGATACCGTTGAGGTGAGACAAGCAGTTGTGACTACTGGTCAACATAAGGTCGCTTCGGAATCAGCAAGAGACCGTGCGGAGACTGCTGCATCTCAAGCGGAACAATCAGCTAACATTGCGAGCACTAAAGCTAACCAAGCGAGTCAATCGGAACAGAACGCTTCAACTAGTGCGTCCCAAGCGAGCCAATCGGCAACTAAAGCAGAACAGGAAGCCAATAAGGCACAGCAGGCTGCCAATGAGGCTATCGGTGGGGCTATTCCAAACAGTAAGAAATCAGATGATGATAACAGTTCAAGTTCAGATACTGTTGCAACTAGTTACGCTGTTAAAAAGGTACGAGACTTTGCAGAAAAACAGTTCTCATTCATCACTAATTTGGACGGCTTTCGTTTTTTAGGTCAAGTAGAATCAATTGAACAACTTCGCACTATAAAACCAACCGCACATGGACAACGTATTTTGGTTAAATCCTACTATAAAGGCGGCACAACAGGCGGTGGTGAGTTTGTGGCGGATTTGCAAGATTTAACGACAGCAGATGATGGAGGAAGTTGTTTTGTTGTTGAGGAAAATGGTGGGCGTTGGAAACGGATATTAGGTAGTGAGATTTCCGCTTTTGATTTTGGTGTAATAGGGGACGGAGTGGTTGATGATAGCCAATCTTTAAATGCATTTGTTAAGGCTTTATCAGTTTATAATATAAAAGGTGTTCTTCCGAAAGGTACTTTCCTGGTTTATAATCGAGTAGAGGTTACATCGGGAAATAATATCCACTTAAGAGGTGCAGGAATAGGTCTTTCTGTTATTAAAAGGGTAGGATTTTCAGGATCCACGTTAAGATTTTATAATTTAAGGGGTTGTATTCTTCAAGATTTTTCTATTAATGGTAATGAAGAGGCTTCTCCAGGTGGTGGAGCAGGGCTTGATTGTGCTAATTTAACGGATAGCGTTATTGAGCGGATAGAGGCATTTGATTGTGCTAATTCAGGGATTTGGGTGATTAGTGGTAAAGCTGAAATCACAAATCATAACGTACATATAAGAAATTGTTTTTCTCATGATAATAAAGGATCTGGTATTCAAATTCAAGGGGCGAAGGCTTCTGGTATTAGCCAAAGTCGGGCTATTCGTTGTGGTTTAGGTGGAGATAGTGTTTCGGGTATTTACTTTAAAGTGCCAGTTGAGGATTGTTACCATTCAGATAATTACGCTGAAGACATTATTGGTGCGGCTTTTGCAGTGGGCTCAAGCTTTCCAGGACAAAAGGCGAAACGTTTAACATTTACAAACTGTCGGGCAATTCATACAGGGTATGCTTTTAGATTAGGGGCAGTTGAAGATGTTCAAGTAACGAATTTAACGGCGTTTTTACGAGGGGAGGCAAATAATATACACGGTTCTGTGGGCGACGGTATTCGCCTAGAACTTACTGCGAAACGGGTCTCGGTAAAAAATGCGAGTATATTTAATGTTGCAAAACATAGAGCTGCGGTACGATGTGTTGGTCAACCATCAGATAATTTTATAGAATTATCTGGTTTTAATATTCCACAGGAAGGATCAATAATTGTATCTTTTAGTGAAAATAGTAGAAACAACACTGTTAAAGTTATATCTCAAGATAAAACAGGGGTTATTCCTGATATTCATAAAGGTAATAACAATACAGTTATTTATGGAGAGAAAATTGTTACTCAAACAGCAGTAGTAAATCAAACGGGGTTACTAACATTACTCAACGATAGTGTTCGTGTTGTTAGGCTAGGTGTTTCTACAAATAATGAAATAACTAATGGGATTACACAACGTAATTTATCTACTATATCAGATTCTTATGATGGACATATTATAAGCTTACAAATAGTAAATGATAATCATGATATTGTTTTGGTAAATACAGGTAATATTCAACTTAAAGGAAATGTGGCTTCATTAAAACTAGATTACGTTATGGATTGTGTTAGTTTTATTTTTACTGAGAGGTTGAATAAATGGTGTCAATTGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
7e6dc1e29dce57577b712feba0c5615abbd88d2fc9312cafe623557f6fddeb61
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8008
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of novel T7-like phage PHB01 against Capsular type D Pasteurella multocida Chen,Y., Sun,E., Yang,L., Song,J. and Wu,B. 2018-01-06 — GenBank