Protein

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Genbank accession
YP_010673016.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 0,99
TSP
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,91
Protein sequence
MSRELMPKSGIMMPHVVVTRDAAVVGVSTVDGVAGAIDLTDKYLQKSDASATYMTKTEGATKQYVTNAIDPVMEGALFKADPFVANDVPFRSEGANGVESVDMIKVTPENAIKIGSYASSVQGVEVHSAGRLQVVDLNDGGIETKYPIYSKRYRPEIEDLPFASIGSYVKDSKGRTIGVTRTGINSDIKQFTEKVTFQQPVTVADAVGDYDAVTLRQLRNSGGGSGGPTMNGISNFNIGDFRLIDSRAYIPSNDIPSDGQLLSRTDYPELWAYAQMITPISDADWLADPLKRSQYSLGDGSTTFRVPDKNGVQPGSIKGLYGRGSGDFTRKIHEAAAPNITGQWQSYAYNNAQQGGAVYFPTPVAQGVLNLTTPEAGTRYISFRLDASRSSPVYGKDDVSEVRTNSFIGVWVIRAKGAFVAANTSWSVINSDANRPAGGTRVTSGSVVAEYKIGSEVEASTTLQTDAYIDGVYYGIIGVYNKTKGVTKQLAFDDSGTLNSDRYAARSRTLMSWNETGIRRGTFSIDNQGIGANYSFNSILSASQASQGGYKTTTHVGMIHNDAGSFADSCWHVSGDENNQFGCRLTLRPNRNEIFYYTWQPGSAGTYTLAMNPVSDERLKHNIQDISPDEAIRAIKGLDFKSFVYNNDNQGRTRRGIIAQQAEKVEPLYVKTRKFHDNDGVEQEQKELDATPMLLDTMQVVQDLLKRIEVLEAKLAEK
Physico‐chemical
properties
protein length:718 AA
molecular weight: 78267,36250 Da
isoelectric point:5,69699
aromaticity:0,08774
hydropathy:-0,40989

Domains

Domains [InterPro]
DC_1514
STR
20–369
DC_1514 IPR030392
SSF88874
STR
248–392
SSF88874 IPR030392
DC_1985
RBD
315–718
DC_1985
YP_010673016.1
1 718
Architecture
STR
RBD
STR 20-392 | RBD 393-718
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010673016.1
1 718
Domain Start End Length (AA) Confidence
N-terminal 1 85 85 0,8616
Central domain 86 284 200 0,4768
C-terminal 285 718 433 0,8898
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-85
Central
86-284
C-terminal
285-718

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage EK010
[NCBI] 		2742112 Uroviricota > Caudoviricetes > Mktvariviridae > Suseptimavirus > Suseptimavirus EK010
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010673016.1 [NCBI]
Genbank nucleotide accession
NC_070981.1 [NCBI]
CDS location
range 62261 -> 64417
strand -
CDS
ATGTCTAGAGAATTAATGCCCAAATCTGGCATTATGATGCCACATGTAGTTGTGACTCGTGATGCTGCTGTGGTGGGTGTGTCTACTGTAGATGGTGTTGCTGGTGCTATTGACCTGACAGATAAATACCTTCAGAAATCTGATGCAAGCGCAACTTATATGACCAAGACAGAAGGTGCAACCAAGCAGTATGTTACGAATGCTATTGACCCTGTTATGGAAGGTGCTTTATTCAAAGCTGATCCATTTGTAGCTAATGATGTACCTTTCCGGTCAGAAGGGGCTAATGGTGTAGAATCTGTAGATATGATTAAAGTTACACCAGAGAACGCAATTAAGATTGGGAGCTATGCCTCTTCTGTTCAAGGAGTAGAAGTGCATTCTGCTGGTCGTCTTCAGGTTGTAGATTTGAATGATGGTGGTATAGAAACCAAGTATCCTATTTACTCTAAACGTTATCGTCCTGAGATCGAGGATTTACCTTTCGCTTCAATCGGTTCCTATGTAAAAGATTCCAAAGGACGCACCATTGGTGTAACTCGAACTGGTATCAACTCTGATATCAAACAATTTACCGAGAAAGTTACCTTTCAGCAACCGGTTACTGTAGCAGATGCTGTAGGTGACTATGATGCAGTTACACTAAGGCAGCTTCGTAACAGTGGTGGAGGTTCTGGTGGCCCTACAATGAATGGTATCTCCAATTTCAACATTGGTGATTTCCGTTTAATTGACAGTAGAGCTTATATCCCATCTAATGATATCCCGTCAGATGGTCAACTTCTTTCTCGTACAGATTATCCAGAGCTTTGGGCATACGCGCAAATGATAACACCTATCTCTGATGCTGATTGGCTGGCAGATCCTCTGAAAAGGTCTCAATATTCACTAGGCGATGGCTCTACCACATTCCGAGTTCCTGATAAGAATGGTGTTCAACCGGGAAGTATAAAGGGTCTATATGGTCGTGGGTCAGGAGATTTCACCAGAAAGATCCACGAGGCCGCCGCGCCAAATATAACTGGTCAGTGGCAATCTTATGCCTACAACAATGCGCAACAAGGAGGGGCCGTTTACTTCCCTACACCAGTTGCTCAAGGGGTGCTAAATCTAACAACCCCCGAAGCTGGGACTAGGTATATCTCATTCAGGCTCGACGCATCGCGCTCAAGTCCGGTCTACGGTAAGGACGACGTTTCTGAGGTTAGAACAAATTCATTCATCGGCGTTTGGGTTATCAGAGCTAAAGGTGCTTTTGTAGCAGCTAACACTTCTTGGTCAGTTATTAATAGTGATGCAAACCGTCCTGCTGGTGGAACTCGAGTAACTAGTGGTTCTGTTGTTGCTGAATATAAAATTGGTTCAGAAGTAGAGGCTTCTACTACGCTCCAAACTGATGCTTATATCGACGGAGTTTATTATGGGATTATTGGTGTTTATAATAAAACCAAAGGTGTTACCAAGCAATTAGCTTTTGACGATTCTGGAACCCTGAACTCTGATAGGTATGCTGCTCGGTCTAGAACATTGATGTCTTGGAACGAAACAGGAATTCGCAGAGGGACGTTTTCTATAGATAACCAAGGGATTGGTGCTAACTACTCTTTTAACTCTATACTGAGTGCTTCCCAAGCATCTCAAGGTGGATACAAAACTACTACCCATGTAGGGATGATTCACAATGATGCTGGATCTTTTGCTGATTCCTGTTGGCATGTCTCTGGTGATGAAAATAACCAATTCGGGTGTCGTTTAACCCTTCGACCAAACAGAAATGAGATTTTCTATTACACATGGCAGCCCGGCTCCGCTGGAACTTATACTCTTGCTATGAATCCTGTATCTGATGAAAGGTTGAAACATAACATCCAAGATATCTCTCCTGATGAAGCAATTCGTGCGATAAAAGGTTTGGATTTCAAATCGTTTGTGTACAACAATGATAATCAAGGAAGAACTCGTCGTGGTATCATTGCACAGCAGGCAGAGAAAGTTGAACCTCTTTATGTTAAAACTCGTAAATTCCATGACAACGATGGGGTAGAGCAGGAACAGAAAGAGTTGGATGCAACTCCAATGCTTTTAGATACCATGCAGGTTGTTCAAGATCTGCTGAAGCGTATTGAAGTTCTAGAAGCGAAGTTAGCAGAGAAGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
19b0cfa0cd3aa1536e214ec0df5134840f2155d10a47d77589d5c77d7b88fb7a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6043
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of the phage EK010 isolated from swine sewage Shahin,K., Bao,H., Soleimani-Delfan,A. and Wang,R. 2022-06-16 — GenBank