Protein
View in Explore- Genbank accession
- YAL64479.1 [GenBank]
- Protein name
- PAAR domain-containing protein
- RBP type
-
TSP
- Protein sequence
-
MGKPATRVGDMQSGHGCFPPTNAIKGASNVFINGKPAMIVGGQYVTHCCPLPGCHPVILGSGSGTVSINGAPAGRIGDKIACGGSVITGSSNVFIGG
- Physico‐chemical
properties -
protein length: 97 AA molecular weight: 9480,84950 Da isoelectric point: 9,01450 aromaticity: 0,04124 hydropathy: 0,23918
Domains
Domains [InterPro]
cd14737
STR
3–96
STR
3–96
G3DSA:2.60.200.60
STR
5–95
STR
5–95
IPR008727
STR
24–87
STR
24–87
1
97
Architecture
STR 3-96 |
Legend:
ATT
STR
RBD
CBM
LEC
ENZ
CHP
LNK
TAS
TTP
UNK
Unmapped
Tail Spike Domain Segmentation
Tail Spike Domain Segmentation
This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.
Domain Layout
1
97
| Domain | Start | End | Length (AA) | Confidence |
|---|---|---|---|---|
| N-terminal | 1 | 95 | 95 | 0,4655 |
| Central domain | 96 | 95 | 1 | 0,1414 |
| C-terminal | 96 | 97 | 1 | 0,7777 |
Note: Constraints were applied during segmentation.
Sequence started with non-N-terminal domain|C-terminal too short, adjusted boundary|CONSTRAINT VIOLATION: Final C-terminal (1 AA) is still below minimum (10 AA). Sequence may be too short.
Sequence started with non-N-terminal domain|C-terminal too short, adjusted boundary|CONSTRAINT VIOLATION: Final C-terminal (1 AA) is still below minimum (10 AA). Sequence may be too short.
Legend:
N-terminal
Central domain
C-terminal
3D Structure with Domain Coloring
The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).
Domain Coloring
N-terminal
1-95
1-95
Central
96-95
96-95
C-terminal
96-97
96-97
Taxonomy
| Name | Taxonomy ID | Lineage | |
|---|---|---|---|
| Phage |
Acinetobacter phage AbIJP1 [NCBI] |
3411817 | No lineage information |
| Host |
Acinetobacter sp. [NCBI] |
472 | cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Moraxellales |
Coding sequence (CDS)
Coding sequence (CDS)
Genbank protein accession
YAL64479.1
[NCBI]
Genbank nucleotide accession
PV126534
[NCBI]
CDS location
range 344265 -> 344558
strand -
strand -
CDS
ATGGGAAAACCTGCTACTAGAGTTGGTGATATGCAATCAGGTCACGGTTGTTTTCCACCAACAAACGCTATAAAAGGCGCATCAAATGTTTTTATAAATGGCAAGCCAGCAATGATTGTTGGTGGTCAATACGTGACGCATTGTTGTCCGCTTCCTGGATGCCATCCCGTTATTTTGGGTTCAGGTTCAGGTACGGTTTCAATTAATGGTGCGCCAGCAGGTCGAATTGGTGACAAAATTGCATGTGGTGGATCGGTTATTACGGGTTCAAGTAATGTATTTATAGGGGGTTAA
Genome Context
Genome Context
Tertiary structure
PDB ID
73d4a335e01020164dcc9927fca22f5d2f552770ac60187df674c237b3d4ed26
Model Confidence
Very high
pLDDT > 90
pLDDT > 90
High
90 > pLDDT > 70
90 > pLDDT > 70
Low
70 > pLDDT > 50
70 > pLDDT > 50
Very low
pLDDT < 50
pLDDT < 50