Protein

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Genbank accession
YP_009608422.1 [GenBank]
Protein name
long tail fiber protein distal subunit
RBP type
TSP
Evidence RBPdetect
Probability 0,70
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MATLKQIQFKRSKVAGVNPTAAQLAEGELAINLKDRTLFTKDDLGNIISLGFAKGGDINGNVTHVGNYTQTGTFNLIGSQNVASGGYIEFAYKATGVGSWAGQHTAKAPIFMDISASTATSEYNPIIKQRFKDGTFSLGTLVSEGSLKIHYINESGDSKYWTFRRDGGFTVDGGGLAVSGGSITTSGNIAALGNITSPQINTKNIILDTKAFGQYDSQSLVQYVYPGTGEENGINYLRKVRAKSGGTIYHEIASAQTGKNDEISWWTGNTLTTKLMGLRNDGAMVLRRSLAIGTITADENTNNYGSPTPMGERYIALGDAATGLKYIKQGVYDLVGNWNSVASITPDSFRSTRKALFGRSEDQGGTWTMPGTNAALLSVQTQADTNNAGDGQTHIGYNSGGKFSHYFRGTGQMNINTQQGMEINPGILKLVTGANNVMFYADGGITSTKQLSIYNGVYLAANNSTAGLTFAPTTTVDGTKQILWEGGTRAGQNKSYVTVKAWGNSFNASGDRTRETVFEVADGQGYYFYSQRIAPTDSETVGPVVTQFNGQVNARGSIITDGSLRVNGLSALSGQVTMDNGLVLSGGGSITGQVKIGNTADAFRIYNAEYGAIFRRSEASLHIIPTLKDAGESGGISNLRPLSISLNNGMVQMRHSVTLGDDGAGGNMVTVDNDNKLVVITSHSRISPNYRMQLGQSAYIDAECTDTARPAGAGSFASQNNENVRAPFYMNIDRTDTSTYVPIVKQRYVQNNSCYSIGTLINGGNFRVHYHEGGDGVSTGAVIKDLGWEFNKNGDFYSPGKLGAGNVRIGTDGNITGGSGNFANLNTTINNLKTDIVSSYPIGAPIPWPTDTPPEGYAIMEGQTFDAGLYPKLAAVYPSGTLPDMRGQTIKGKPSGRAVLSTEADGVKSHSHSASASNTDLGTKNTSSFDYGSKTTSSFDYGTKTSNTTGNHSHTVSGNTSSAGAHQHTRSGPQVTAAWADDLFRDGVTTISANAYAKLNSGITGSTLATKVGKTSNDGAHTHSWSGTTSTTGNHAHTVGIGAHTHTVGIGAHTHSVAIGSHGHTITVNSTGNTENTVKNVAFNYIVRLA
Physico‐chemical
properties
protein length:1090 AA
molecular weight: 115018,67980 Da
isoelectric point:8,32398
aromaticity:0,08073
hydropathy:-0,36229

Domains

Domains [InterPro]
DC_0538
STR
1–1088
DC_0538
IPR051934
Unmapped
732–1090
IPR051934
SSF88874
STR
831–963
SSF88874 SSF88874
IPR037053
ATT
838–891
IPR037053 IPR005003 IPR005003 IPR005003 IPR005003
IPR011083
ATT
843–890
IPR011083
YP_009608422.1
1 1090
Architecture
STR
ATT
STR
STR 1-837 | ATT 838-891 | STR 892-1089 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009608422.1
1 1090
Domain Start End Length (AA) Confidence
N-terminal 1 299 299 0,1352
Central domain 300 498 200 0,4395
C-terminal 499 1090 591 0,7679
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-299
Central
300-498
C-terminal
499-1090

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage ST0
[NCBI] 		2005047 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Mosigvirus
Host Escherichia coli H8
[NCBI] 		2072452 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Escherichia > Escherichia coli

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009608422.1 [NCBI]
Genbank nucleotide accession
NC_041990 [NCBI]
CDS location
range 71927 -> 75199
strand -
CDS
ATGGCTACATTAAAACAGATACAATTTAAAAGAAGCAAAGTGGCAGGAGTTAATCCTACTGCAGCACAATTAGCCGAAGGCGAATTAGCGATAAACTTAAAAGATCGAACTCTTTTTACTAAAGATGACCTCGGTAATATTATTAGCCTAGGCTTTGCTAAAGGCGGCGATATTAACGGTAATGTAACTCACGTAGGTAACTATACTCAGACAGGTACATTTAATTTAATAGGCTCACAAAATGTTGCATCTGGTGGATATATCGAATTTGCTTATAAGGCCACCGGAGTTGGTTCTTGGGCAGGTCAACACACGGCAAAAGCCCCTATTTTCATGGATATTTCCGCATCAACCGCTACTTCGGAATATAATCCTATAATTAAACAACGCTTTAAAGATGGAACTTTTTCATTAGGTACTTTAGTTTCTGAAGGTTCGTTGAAGATTCATTATATCAATGAATCTGGCGATTCGAAATATTGGACGTTTCGACGCGACGGCGGATTTACTGTTGACGGCGGAGGTTTAGCAGTATCAGGAGGTAGTATAACTACATCTGGAAATATTGCAGCTCTCGGAAATATTACTTCACCTCAGATTAATACTAAAAATATTATTTTAGATACAAAGGCATTCGGACAATATGATTCACAATCATTAGTTCAATATGTTTATCCTGGAACAGGTGAAGAAAATGGTATAAACTATCTTCGTAAAGTTCGAGCTAAATCAGGCGGAACTATTTACCATGAAATCGCTTCAGCTCAAACTGGTAAGAACGATGAAATTTCTTGGTGGACCGGAAATACACTTACTACTAAATTAATGGGTCTTCGTAATGATGGCGCAATGGTATTACGTCGTTCACTTGCTATTGGCACAATTACTGCTGACGAAAATACTAACAACTATGGCTCTCCTACTCCAATGGGAGAAAGATATATTGCTTTGGGCGATGCTGCAACTGGTTTAAAATATATTAAGCAAGGCGTTTATGATTTAGTAGGTAATTGGAATTCTGTTGCTTCTATTACTCCTGATAGTTTCCGTAGTACTCGTAAAGCATTATTTGGACGCTCAGAAGACCAAGGCGGAACCTGGACAATGCCTGGAACCAACGCCGCGCTTTTATCGGTTCAAACCCAGGCTGATACAAACAATGCAGGTGATGGTCAAACCCACATTGGATATAATTCTGGCGGTAAATTTTCCCATTATTTCCGTGGTACAGGTCAGATGAATATCAATACCCAACAAGGTATGGAAATTAACCCGGGTATTTTGAAATTGGTAACCGGTGCAAATAATGTGATGTTTTATGCTGATGGCGGTATTACATCCACTAAGCAGCTTTCAATATATAATGGTGTATATTTAGCAGCTAATAATTCTACTGCCGGGCTAACATTCGCTCCAACTACTACAGTTGATGGCACTAAGCAAATTTTGTGGGAAGGTGGTACTCGTGCTGGGCAGAATAAAAGCTACGTAACTGTTAAAGCATGGGGTAATTCATTTAACGCATCCGGCGATCGTACTCGTGAAACAGTTTTTGAAGTAGCTGACGGGCAGGGATATTATTTTTATTCTCAGCGCATAGCTCCAACCGATTCAGAAACTGTGGGACCTGTTGTAACCCAGTTCAATGGACAAGTTAATGCTAGAGGGAGCATTATCACCGATGGAAGTCTTAGAGTTAATGGATTAAGTGCATTATCCGGACAAGTTACTATGGATAACGGGCTTGTTTTATCCGGTGGCGGTTCTATTACCGGTCAAGTTAAAATCGGTAATACCGCAGATGCTTTCCGTATTTACAATGCTGAATATGGAGCTATTTTCCGTCGTTCTGAAGCGTCTTTGCATATTATACCTACACTTAAAGATGCAGGTGAAAGTGGTGGAATAAGTAATCTCCGTCCACTAAGTATTAGTCTTAATAATGGTATGGTTCAAATGCGCCATTCTGTTACGTTAGGTGATGACGGTGCTGGCGGTAATATGGTGACCGTTGATAATGATAATAAACTTGTTGTTATAACTAGCCATAGTCGCATTTCTCCTAATTACCGTATGCAATTAGGACAATCGGCATATATCGACGCTGAATGTACTGATACTGCACGACCTGCTGGAGCTGGTTCTTTTGCTTCACAAAATAATGAAAACGTTCGTGCTCCGTTCTACATGAATATAGATAGAACCGATACAAGCACTTATGTTCCTATTGTGAAACAAAGATACGTTCAAAATAATAGTTGCTATTCTATTGGTACTTTAATTAATGGTGGTAACTTTAGAGTTCATTATCACGAAGGTGGTGACGGCGTTTCTACTGGTGCTGTTATAAAGGATCTTGGATGGGAATTTAATAAAAACGGTGATTTTTATTCTCCTGGTAAATTAGGCGCTGGTAATGTTCGTATTGGTACTGATGGTAATATCACTGGTGGTTCTGGTAATTTTGCTAACTTGAATACCACAATAAATAACCTTAAGACGGATATTGTCTCGAGTTACCCGATTGGTGCTCCGATTCCTTGGCCTACTGATACACCTCCTGAAGGCTATGCCATAATGGAAGGTCAAACATTTGATGCTGGCTTGTATCCTAAGTTAGCTGCAGTGTATCCTTCCGGCACTCTGCCTGATATGCGTGGTCAAACTATCAAGGGTAAACCATCTGGTCGTGCTGTATTAAGTACAGAAGCAGACGGTGTTAAGTCACATAGCCATAGTGCAAGTGCATCAAACACAGATTTGGGTACTAAAAATACGTCAAGTTTTGATTACGGTAGCAAAACGACTTCAAGCTTTGATTATGGTACTAAGACCAGTAATACCACTGGCAACCATAGCCATACAGTGAGTGGTAATACTAGTTCCGCTGGTGCTCACCAACACACGCGTTCAGGTCCACAGGTCACTGCTGCATGGGCAGACGATTTGTTTAGAGACGGGGTTACTACGATAAGTGCAAACGCATACGCTAAACTTAACTCAGGTATCACTGGTTCGACTTTAGCAACTAAGGTCGGTAAAACATCAAATGATGGTGCCCACACCCATAGTTGGTCTGGTACTACTAGCACCACAGGCAACCATGCGCATACGGTAGGTATTGGCGCTCATACTCACACCGTAGGTATTGGCGCTCACACTCATTCAGTAGCTATTGGTTCGCACGGTCATACTATCACTGTAAATAGTACAGGTAATACAGAAAACACAGTTAAAAACGTTGCTTTTAACTATATCGTTCGTTTAGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7983ce98a34331547a3d1c33d5c97b80cd8beca44450a5b55526b53e3b0dd712
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2818
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Escherichia phage ST0 Liu,X., Liu,H. and Li,J. 2017-12-19 — GenBank