Protein

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Genbank accession
YP_009792488.1 [GenBank]
Protein name
base plate tail tube protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MFYSLMRESKIVIEYDGRGYHFDALSNYDASTSFQEFKTLRRTIHNRTNYADSIINAQDPSSISLAINFSTTLIESNFFDWMGFTREGNSLFLPRNTPNIEPIMFNMYIINYNNSCIYFENCYVSTVDFSLDKSIPILNVGIESGKFSEVSTFRDGYTITQGEVLPYSPPAVYTNSAPLPALVSASMSFQQQCSWREDRSIFDINKVYTNKRAYVNEMNASATLAFYYVKRLVGDKFLNLDPETRTPLIIKNKYVSITFPLARISKRLNFSDLYQVEYDVIPTADSDPVEINFFGERK
Physico‐chemical
properties
protein length:298 AA
molecular weight: 34317,31210 Da
isoelectric point:5,23427
aromaticity:0,14430
hydropathy:-0,25738

Domains

Domains [InterPro]
IPR056389
ATT
1–297
IPR056389
YP_009792488.1
1 298
Architecture
ATT
ATT 1-297 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009792488.1
1 298
Domain Start End Length (AA) Confidence
N-terminal 1 11 11 0,9130
Central domain 12 210 200 0,0200
C-terminal 211 298 87 0,2088
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-11
Central
12-210
C-terminal
211-298

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SP01
[NCBI] 		1920294 Uroviricota > Caudoviricetes > Demerecviridae > Tequintavirus > Tequintavirus SP01
Host Salmonella enteritidis
[NCBI] 		149539 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009792488.1 [NCBI]
Genbank nucleotide accession
NC_047859 [NCBI]
CDS location
range 22643 -> 23539
strand +
CDS
ATGTTTTATTCTCTCATGCGAGAGTCTAAAATAGTTATTGAGTATGATGGTAGAGGGTATCATTTTGATGCCCTCTCTAACTATGATGCTAGTACGTCTTTTCAAGAGTTTAAAACTCTTAGACGTACTATTCATAATCGTACCAACTATGCAGACTCTATTATTAATGCTCAAGATCCTTCATCTATTTCATTGGCAATAAATTTCAGTACTACGCTTATTGAATCTAATTTCTTTGACTGGATGGGATTCACGCGTGAGGGAAATTCTTTATTTTTGCCAAGAAATACCCCCAATATTGAACCTATTATGTTCAATATGTATATTATTAATTATAATAATAGCTGTATTTATTTCGAAAACTGTTATGTATCAACAGTTGATTTTTCTCTAGATAAGAGTATACCGATTCTAAATGTTGGTATTGAGTCTGGAAAATTCTCTGAAGTATCTACTTTCCGTGATGGGTATACAATTACACAAGGTGAAGTACTTCCATATAGTCCTCCAGCTGTGTATACTAATAGCGCTCCATTGCCTGCATTAGTTTCAGCATCTATGTCCTTCCAGCAACAATGTTCTTGGAGAGAAGATAGAAGTATATTTGATATAAATAAAGTTTATACTAATAAACGAGCTTATGTCAATGAGATGAATGCTTCCGCAACGCTAGCTTTCTATTACGTTAAGAGATTGGTAGGAGATAAGTTCTTGAATCTAGATCCTGAAACAAGAACTCCACTAATTATTAAAAATAAATATGTTTCTATAACATTCCCTTTAGCACGTATTTCAAAACGCCTAAACTTCTCAGATTTGTATCAGGTAGAGTATGATGTGATACCTACTGCTGATTCAGATCCTGTAGAAATAAACTTCTTTGGAGAAAGAAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5da51cfc2786878ae0efa670fd45f383b58157572903035e1611664675556b5e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7900
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of Siphoviridae bacteriophage capable of lysing multidrug-resistant Salmonella Chen,Y., Song,J. and Wu,B. 2021-12 — GenBank