Protein

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Genbank accession
XGU08628.1 [GenBank]
Protein name
colanic acid degradation
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MADLLPTVKVSDLPTATDSFEGDFLVVDQSDATRKSTWSNVFSRFGIMRLFSFQDGGTLISAKDQVIDRSTNKIYQWTGAYPKLVPANSTPENTGGVGTGGWSVNDPALRGDLAGPSGSSYVGGPAGTVAQSLDGFVTPSQFVGKYPTTSEAVTAMVAYAKENKKAVLAWGWNLVLETSVYIDGVEWYGGSFNQSGGNRYMYLSNSTFRWVTFTGVCTRHYGGRLIITDSSWVNNTNTAAMLLQALPIDGTIDILDSDFRGCKYGILQQGTGALVTRARFARLNFNDLTGDAIECNVVNRHYKAGGLTIEDINIDNINNTDNSPNWGIGIGVAGQGPYGANASDDQYVSGIIIRNVKMRRVRQCIHFELCRDFKVENVEVYPDASVSNGTLLASGGVVCYGSKDFIIDGVRGEMVNGATRFIYFGWGVNAGVYAAPCRDFTLRNVRSHTGLVDVPVSAADDWTNTVTIEDVECDTFKYRGLVSRLRLANIRCNKFDGIGDYEAGQGEAGGAMKRWAWCSAEILNITSLDSNGVANGNFGQVGFDHLTTYGCNFDVVQHSKTNGNRGVTLLNAGNIYIADNDLFPQGKEFVKGDIILKKTGGLFVVETGGSYIEPNDYIKATTVGSKTIQCAADSGVSQPWATRAFKSAGLQLTIPGAGAGGSDLKTTVIRAPYQKGAWTTPFYLDIADPIQTATPDNTALVSTNPVVYSERT
Physico‐chemical
properties
protein length:712 AA
molecular weight: 76669,89530 Da
isoelectric point:5,31282
aromaticity:0,10112
hydropathy:-0,16433

Domains

Domains [InterPro]
DC_1918
ATT
1–330
DC_1918 DC_0045
G3DSA:2.10.10.80
ATT
47–115
G3DSA:2.10.10.80
IPR040775
RBD
52–103
IPR040775
XGU08628.1
1 712
Architecture
ATT
RBD
ATT 1-330 | RBD 410-712
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XGU08628.1
1 712
Domain Start End Length (AA) Confidence
N-terminal 1 148 148 0,9903
Central domain 149 580 433 0,9949
C-terminal 581 712 131 0,9354
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-148
Central
149-580
C-terminal
581-712

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_Sen_SG_WM_RUS_R7
[NCBI] 		3234147 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enteritidis
[NCBI] 		149539 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XGU08628.1 [NCBI]
Genbank nucleotide accession
PQ002170 [NCBI]
CDS location
range 24098 -> 26236
strand +
CDS
ATGGCAGATCTATTACCTACCGTCAAGGTCTCAGACTTACCGACTGCGACGGACTCTTTCGAGGGAGATTTCCTGGTTGTTGACCAATCAGATGCAACACGTAAGTCTACGTGGTCGAATGTCTTTTCTCGTTTTGGCATCATGCGCCTATTCTCCTTCCAGGATGGGGGGACGCTGATTTCAGCGAAGGACCAGGTAATTGACCGCTCAACCAACAAGATTTACCAGTGGACAGGAGCATATCCTAAACTGGTTCCAGCCAACTCTACCCCGGAGAATACCGGGGGCGTTGGTACAGGTGGTTGGTCTGTAAATGACCCAGCACTCCGTGGGGATCTTGCCGGACCGAGCGGGTCAAGTTATGTTGGTGGTCCAGCAGGTACAGTGGCACAATCTCTCGATGGATTTGTCACACCATCGCAGTTTGTTGGTAAATATCCTACCACAAGTGAAGCAGTAACCGCAATGGTTGCATATGCAAAGGAAAACAAAAAGGCAGTTCTGGCGTGGGGGTGGAACCTTGTCCTTGAGACGAGTGTTTACATCGACGGGGTAGAGTGGTATGGTGGTAGCTTTAATCAGTCTGGTGGGAACAGATATATGTATCTGTCCAACAGCACATTCCGTTGGGTAACGTTCACGGGTGTCTGTACACGCCACTATGGTGGTCGTCTTATTATCACCGACTCTTCGTGGGTGAATAACACAAACACCGCAGCAATGCTGTTGCAGGCCCTCCCTATTGACGGTACTATTGACATCCTTGATAGTGATTTCCGTGGGTGTAAATATGGTATCCTTCAACAAGGTACAGGTGCTTTGGTAACCCGTGCTCGTTTTGCTCGCCTGAACTTCAATGATTTGACAGGTGATGCAATTGAGTGTAACGTTGTTAACCGCCACTATAAAGCGGGTGGCTTGACAATTGAGGACATCAATATCGACAACATCAACAACACAGATAACTCGCCAAACTGGGGTATCGGTATTGGTGTTGCAGGGCAAGGACCTTACGGTGCCAATGCTTCTGATGACCAATACGTCAGCGGGATTATTATCCGTAACGTCAAAATGCGTCGTGTTCGTCAGTGCATCCACTTCGAGCTTTGCCGTGATTTCAAGGTTGAGAACGTAGAGGTTTATCCTGATGCCTCCGTGTCTAACGGTACACTTCTTGCATCCGGTGGTGTTGTGTGTTACGGTTCCAAAGACTTCATCATTGATGGTGTTCGAGGAGAGATGGTGAACGGAGCTACGCGCTTCATCTACTTCGGCTGGGGTGTTAACGCAGGTGTTTATGCTGCCCCTTGTCGTGACTTCACACTGAGAAACGTGCGTAGTCATACAGGGCTTGTTGATGTACCTGTTTCCGCTGCCGATGACTGGACAAACACGGTGACAATTGAAGATGTTGAATGCGACACCTTCAAGTACCGAGGTCTTGTATCCCGTCTTCGTCTTGCCAATATCCGCTGTAACAAGTTTGACGGCATCGGTGATTACGAAGCAGGTCAGGGTGAGGCAGGTGGTGCTATGAAGCGTTGGGCTTGGTGTTCTGCTGAGATCCTCAACATCACCAGCCTTGACTCCAATGGTGTTGCCAATGGCAATTTCGGGCAGGTAGGCTTTGACCATCTGACTACCTACGGCTGTAATTTCGATGTTGTACAACATTCGAAGACAAACGGAAACCGTGGGGTGACATTGCTTAATGCGGGTAATATCTACATCGCTGACAATGATCTTTTCCCACAAGGGAAGGAGTTCGTAAAAGGTGATATCATCCTCAAGAAGACTGGGGGGTTGTTTGTTGTTGAGACAGGGGGTTCATACATTGAGCCAAATGACTACATCAAGGCAACAACCGTTGGTTCTAAGACAATTCAGTGTGCAGCAGATTCTGGAGTGAGTCAGCCTTGGGCTACTCGTGCTTTCAAATCTGCGGGTCTGCAACTGACAATCCCCGGCGCTGGCGCTGGAGGTTCAGATCTTAAAACGACCGTTATTCGCGCACCATACCAAAAGGGAGCTTGGACAACACCGTTCTACCTTGACATTGCTGACCCAATTCAGACGGCAACGCCTGATAATACAGCACTTGTTTCAACAAACCCGGTAGTATACAGCGAAAGGACTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ce8bd8e52f6dab71134cf2526a5aae7ec9705fc12cc3415e1a6897628b11b699
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7277
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50