Protein

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Genbank accession
ABI36836.1 [GenBank]
Protein name
putative pectin lyase
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MSSMKYPYRDLGVTFDRQFRNDLNANFDDIEHDIRQIGGEAAQQALEAAHEAETQAIYAQQMGDYAEEKGDYAAQQGDYAKTQGDYAKAQGDAANLAATNANDAANNANSAAANADNAAATASNAADNANTAADNANDAATNANTAADNANTQATNAQNAAQSANDAATNANNAADNANTQAAYAQIQGDYAKAQGDYAKQVGDENKTRWLNPVATFADIATTYPNPQHGDTVMVTDDGENSGSVYRYENGQWNLTQKHNDLAIADVQNKIGILKTIAVNVKEFGTKGDGVTDDTVAIQNAINSIVSSLNNASGQGGIVYFPTGTYKVTSKITINKSNIRLVGAGMSATCIKSTITNGNPVFEFVPSDTAQRLCFVGIEKMCIDGQNNDCIGVSLKKISLGRFLDFGVRYCANHGLYIEEVWDTNIIGLYNTDNGDLARNKHGVYIYNGTSDNSNRLLFIACHFEANNGSHVYFDSTGNRRRNGNNQFIGCKFHGKDPSALPGNNPNTPHMYLDGDVTYVMNCYFYQCNNDFIKVKGDRNKIIGCDFYNCTGYFVNLTGTSMLNVIDGCSGQYFGSGLAPFNNPTNENFFCSDFIGENRKLGWNRSYILDQGGRLALFQNVYRSGANFIQPKGTNASFGIQIADNTVDGVAFVGANASGTDNSNVTLTTLLNVTLDGIKPKVPITFTPVTASSTLNNSLFVDSADNKLKFKDNTGTVKIVTLT
Physico‐chemical
properties
protein length:723 AA
molecular weight: 77699,31070 Da
isoelectric point:4,89625
aromaticity:0,09129
hydropathy:-0,44578

Domains

Domains [InterPro]
DC_1672
STR
16–147
DC_1672 DC_1709
Coil
Unmapped
133–181
Coil IPR011050
IPR012334
STR
277–721
IPR012334
IPR024535
ENZ
279–363
IPR024535
ABI36836.1
1 723
Architecture
STR
STR
STR 16-147 | STR 180-721 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ABI36836.1
1 723
Domain Start End Length (AA) Confidence
N-terminal 1 294 294 0,9774
Central domain 295 625 332 0,9827
C-terminal 626 723 97 0,7396
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-294
Central
295-625
C-terminal
626-723

Taxonomy

  Name Taxonomy ID Lineage
Phage Geobacillus virus E2
[NCBI] 		447909 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Geobacillus
[NCBI] 		129337 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ABI36836.1 [NCBI]
Genbank nucleotide accession
DQ453159 [NCBI]
CDS location
range 13286 -> 15457
strand +
CDS
ATGTCATCTATGAAATATCCATATCGTGATTTAGGTGTTACGTTCGACCGTCAATTCCGCAACGATTTAAACGCGAATTTTGATGACATTGAACATGACATTCGACAAATCGGCGGAGAAGCGGCACAACAAGCGTTAGAAGCCGCACATGAAGCGGAGACACAAGCGATTTACGCTCAACAGATGGGGGACTATGCGGAAGAAAAAGGCGATTATGCGGCGCAACAAGGGGATTATGCCAAAACACAAGGGGATTACGCGAAGGCACAAGGAGATGCGGCTAATTTAGCGGCAACTAATGCGAATGATGCTGCAAACAATGCAAATAGCGCGGCTGCTAATGCTGATAATGCGGCGGCCACCGCAAGTAATGCAGCCGACAACGCAAATACAGCGGCAGACAATGCCAACGATGCAGCTACTAATGCAAATACAGCCGCGGACAACGCCAATACACAAGCAACGAACGCACAAAACGCGGCACAATCAGCAAATGACGCGGCAACCAATGCCAATAATGCGGCAGATAATGCGAATACACAAGCCGCATATGCTCAAATACAGGGTGATTATGCTAAAGCGCAAGGCGACTATGCAAAACAAGTCGGAGATGAAAACAAAACACGCTGGTTGAACCCGGTTGCGACGTTTGCGGATATTGCGACAACCTACCCGAATCCGCAACATGGCGATACGGTAATGGTAACAGATGATGGGGAAAATAGCGGAAGTGTATATCGTTATGAAAATGGTCAATGGAATTTGACACAGAAACACAACGATTTAGCTATTGCGGATGTTCAAAATAAAATTGGAATTTTAAAGACTATTGCTGTTAATGTGAAAGAATTTGGTACTAAAGGTGATGGAGTAACGGATGATACCGTTGCTATCCAAAATGCGATTAACAGTATAGTATCTTCATTAAATAATGCTAGCGGACAAGGGGGAATCGTTTATTTTCCGACAGGAACATATAAAGTAACATCGAAAATTACGATTAATAAAAGTAATATTCGTTTAGTCGGCGCAGGAATGAGTGCGACTTGTATAAAATCAACTATTACAAACGGTAATCCAGTGTTTGAATTCGTTCCGTCTGATACAGCACAAAGATTATGTTTTGTTGGAATAGAAAAAATGTGTATTGATGGGCAAAATAATGACTGTATAGGAGTAAGTTTAAAGAAAATATCGTTAGGAAGATTTTTAGATTTTGGAGTTCGTTACTGCGCCAATCACGGACTTTATATAGAGGAAGTTTGGGATACAAATATCATTGGCTTGTATAACACCGATAATGGTGATTTAGCAAGAAATAAACACGGTGTCTATATTTATAACGGAACGTCAGATAACAGCAACAGACTTCTTTTCATTGCTTGTCATTTTGAGGCGAACAATGGCAGCCATGTTTATTTTGACAGTACAGGAAATAGACGGAGAAACGGGAACAATCAATTTATAGGGTGTAAATTTCACGGGAAAGACCCTTCTGCTTTGCCGGGCAATAACCCTAATACACCTCATATGTATTTAGACGGCGATGTGACCTATGTTATGAATTGCTATTTTTATCAATGTAACAACGATTTTATTAAAGTAAAAGGTGACAGAAACAAAATCATCGGTTGTGATTTTTATAACTGTACCGGATATTTTGTAAACTTAACCGGTACAAGTATGTTGAATGTTATTGACGGTTGCTCCGGTCAATATTTCGGAAGTGGATTAGCACCGTTCAATAACCCTACAAACGAAAATTTCTTCTGTTCTGACTTTATTGGGGAAAACAGAAAATTGGGCTGGAATCGCTCGTATATTTTAGATCAAGGCGGAAGACTGGCGCTTTTCCAAAACGTATATAGATCGGGAGCAAACTTCATCCAACCTAAAGGAACAAACGCAAGTTTTGGTATCCAAATCGCAGATAACACAGTAGATGGTGTGGCATTTGTCGGCGCTAATGCTTCCGGAACAGATAACTCAAACGTCACGCTCACCACACTTTTGAACGTTACATTAGACGGTATTAAACCTAAAGTACCGATTACGTTCACGCCGGTAACCGCGTCCAGTACCCTTAATAATTCGTTATTTGTAGACAGCGCAGATAATAAACTGAAATTCAAAGACAACACAGGAACGGTAAAAATTGTAACTTTAACTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ca479fc57850d34ec6ac68c1f5b8cc96678a4a843a4698af5dbbde554a1d912a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7264
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of a novel portal protein from deep-sea thermophilic bacteriophage GVE2 Wang,Y. and Zhang,X. 2008 18573317 GenBank
Complete genome sequence and transcription profile of a Geobacillus virus Liu,B. and Zhang,X. 2013-06-27 — GenBank
Two novel bacteriophage of thermophilic bacteria isolated from deep-sea hydrothermal fields at the first time Liu,B. and Zhang,X. 2006-07-06 — GenBank