Protein

View in Explore
Genbank accession
QEA10908.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,65
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MNVSVIQKVGGVRIVGYKGGKSGGGGRKAVETPDSLHSISYAKVLDLISEGPIVGPVHGIANMLRDIYLDGTPIANANGSLNFQGVAVNFRAGTQTQSYIQGFPATEVTSGVDVELDSSQPWVRQVTNPTLSAVRVTLEVRGLSKVNPSNEEIGGYRIDYAIDVQAGTGIYREVVRGAFDGKTTDVYARSHRVELPEGASNWTIRVRRLTPNANSQMIQDRTFIQSVTEIIDAKLRMPMSAVVGIQVDASQFRAVPQRAYHFRGRIIRVPSNYDEETRQYFGPWDGAFKQAYTNNPAWIFYDMASNDRYGLGERLGPAALSQLKWALYPIAQYCDEMVPDGKGGTEPRFTCNCYLQQDGDAVRVMNDLASMFMGMVYEASGAVMVASDMPSSYSYTFSASNIEGGRVTSEGASRSTRYTVAQVTYNDMTDFGRAKLEVVEDEEGMQRYGVRITQIKPIGCTSRGQAQRYGRWALTTAKLQADVSSFVTGLEHAVVAPGRIIRVSDPHLAGRRIQGRIRAATPTVVTTDAEVGVRPGDRLIVNLPSGVSEERIVSNAVGQFLTMDNTEFSMDSTEITMDMVGLPGSTLTITVTQPFSELPEAESVWTVESESLTNRLYRVRAIRRREGLKAEILAVEHNPSKYDHIDFATRIEQPPITVVPPGIQDPPTDVVLVARSIVDQGIARHTATISWKRAKSAVAYQVQWRRDGSDWIDAGRTGSASIDIQDIRAGVYVARVRAINAADIPSVWEVSSETSLKGDLAPPPALVNLTATSQVFGILLRWGFPQGRFTAQRTEIWRSATNDLQTAEKLGDFAFPQSSHMLLGLAAGTRLYFWGRIVDLNGEYGAWFPASAGVMGESSWDASEYLEYFKGQIGRDELAQGLVEEIDGLRDGMDGFQALVDQERTERIAEDEALAQEVTTVKATADGAAAGVQQTSTALVSLDGKLQATWTVQAQVAQDGKVYAAGMTLGAYTDEGGQVQTSVYFLADRFAFLSLANGEISTPFVVQNGQTFLNQAFIGTAWIKSAQIESLDAGKIVVGVMSADRISTNTLVAKLASITTAYITTAHIGVAQVDTLRLASGAVVAGSHSVINTSWGSSGSTLVTIATGSIYLPYGGAVTAFFQYAQSGGSYPSGRNTIVTIDGEIVPNAVTNTADGAAMFTWISKAFSSGKTVAWSIQVRRPVDGTSSMSGRAALLAFQR
Physico‐chemical
properties
protein length:1200 AA
molecular weight: 129792,49960 Da
isoelectric point:5,49999
aromaticity:0,08333
hydropathy:-0,13558

Domains

Domains [InterPro]
DC_0014
STR
2–1195
DC_0014
IPR053171
Unmapped
19–888
IPR053171 IPR015406
IPR055385
ATT
107–233
IPR055385 IPR032876 IPR013783
IPR003961
STR
665–742
IPR003961
IPR036116
STR
666–748
IPR036116
QEA10908.1
1 1200
Architecture
STR
ATT
STR
ATT
STR
STR 2-106 | ATT 107-233 | STR 234-358 | ATT 359-519 | STR 520-1195 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QEA10908.1
1 1200
Domain Start End Length (AA) Confidence
N-terminal 1 551 551 0,8832
Central domain 552 967 417 0,0348
C-terminal 968 1200 232 0,5199
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-551
Central
552-967
C-terminal
968-1200

Taxonomy

  Name Taxonomy ID Lineage
Phage Bordetella phage vB_BbrS_PHB09
[NCBI] 		2601609 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Bordetella bronchiseptica
[NCBI] 		518 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QEA10908.1 [NCBI]
Genbank nucleotide accession
MN103401.1 [NCBI]
CDS location
range 34572 -> 38174
strand +
CDS
GTGAACGTAAGCGTCATTCAGAAAGTCGGTGGTGTCCGCATCGTCGGCTACAAGGGCGGCAAGAGCGGCGGGGGCGGCCGCAAGGCGGTGGAGACGCCCGACAGCCTGCACAGCATTTCGTACGCCAAGGTGCTGGATCTGATTTCCGAGGGGCCGATTGTCGGGCCAGTGCATGGCATAGCCAACATGCTGCGCGATATCTACCTGGATGGAACGCCGATCGCCAACGCGAACGGGTCGTTGAACTTCCAGGGCGTGGCCGTGAACTTCCGCGCTGGCACGCAGACGCAAAGCTACATCCAGGGCTTCCCGGCAACGGAGGTGACATCCGGCGTTGACGTGGAGCTGGATTCGTCGCAGCCCTGGGTGCGGCAGGTGACGAATCCAACATTGTCGGCTGTACGCGTCACGCTGGAGGTGCGCGGCCTGTCGAAGGTGAATCCGTCCAATGAGGAGATTGGCGGCTACCGAATCGACTACGCCATCGACGTACAGGCGGGAACCGGCATCTACCGGGAAGTGGTGCGCGGGGCCTTCGATGGCAAGACGACCGATGTGTACGCACGTTCGCATCGTGTCGAGCTGCCCGAGGGCGCCAGCAACTGGACTATCCGCGTGCGTCGGCTGACGCCCAATGCCAACAGCCAGATGATCCAGGACAGGACGTTTATCCAGTCCGTTACCGAAATCATCGACGCCAAGCTGCGCATGCCCATGTCGGCGGTGGTCGGCATCCAGGTCGATGCCTCGCAGTTCCGGGCCGTGCCGCAGCGCGCTTACCACTTCCGAGGACGCATTATCCGCGTGCCGTCGAACTACGACGAAGAAACCCGGCAGTACTTTGGCCCTTGGGATGGAGCATTCAAACAGGCGTACACCAACAATCCGGCCTGGATCTTTTACGACATGGCCAGTAACGACCGCTACGGACTGGGCGAGCGTCTCGGCCCTGCGGCGTTGTCTCAGTTGAAGTGGGCGCTGTACCCGATCGCGCAGTATTGCGATGAGATGGTGCCGGACGGCAAGGGCGGAACCGAACCGCGCTTTACGTGCAACTGCTATCTGCAGCAGGACGGCGATGCCGTGCGGGTCATGAACGACTTGGCGAGCATGTTTATGGGCATGGTCTATGAGGCTTCGGGTGCGGTCATGGTCGCGTCCGACATGCCGAGCAGCTACTCGTACACCTTTTCGGCCAGCAACATAGAGGGCGGCCGGGTCACCAGCGAGGGGGCATCGCGCAGCACGCGATACACAGTGGCCCAGGTGACCTACAACGACATGACCGATTTTGGTCGCGCCAAACTGGAGGTGGTAGAGGACGAGGAAGGGATGCAGCGGTATGGCGTGCGCATCACCCAGATCAAGCCGATCGGTTGCACCTCGCGGGGGCAGGCGCAGCGGTACGGCCGGTGGGCGTTGACCACGGCCAAGCTGCAGGCCGACGTGTCTTCTTTCGTCACGGGGCTGGAGCATGCCGTGGTGGCGCCGGGCCGGATCATTCGGGTATCCGATCCGCACCTGGCGGGTCGCCGCATCCAGGGGCGAATCCGCGCCGCGACGCCTACCGTGGTGACGACCGACGCCGAGGTGGGGGTACGACCGGGGGATCGCTTGATTGTGAACCTGCCCAGCGGGGTGTCCGAGGAAAGGATTGTCAGCAACGCCGTAGGGCAGTTCCTGACCATGGATAACACCGAGTTTTCCATGGACAGCACGGAAATCACCATGGACATGGTGGGCCTGCCGGGGTCTACGCTGACCATCACCGTGACGCAGCCGTTTTCTGAGCTGCCCGAGGCTGAGTCGGTCTGGACGGTCGAATCGGAATCCTTGACCAACCGGCTTTACCGGGTGCGGGCGATCCGCCGGCGGGAGGGGCTGAAGGCCGAGATACTGGCCGTCGAGCACAACCCGAGCAAGTACGACCACATCGACTTTGCCACGCGCATCGAGCAGCCGCCGATCACGGTCGTTCCGCCCGGCATCCAGGATCCACCGACCGATGTGGTGCTGGTGGCGCGCTCGATCGTTGATCAGGGCATTGCCCGTCACACGGCGACAATCAGCTGGAAGCGCGCCAAGTCCGCCGTGGCCTATCAGGTGCAATGGCGCCGTGATGGATCCGACTGGATAGACGCCGGCCGCACCGGCTCAGCGTCGATTGACATCCAGGATATCCGCGCCGGTGTGTACGTTGCTCGCGTCCGGGCCATCAATGCGGCCGATATTCCCTCTGTCTGGGAGGTGTCGAGCGAAACCAGCCTGAAAGGCGACTTGGCGCCGCCGCCGGCGCTGGTGAACCTGACCGCCACGTCGCAGGTGTTCGGAATCCTGCTGCGCTGGGGGTTCCCGCAAGGGCGCTTCACGGCCCAGCGGACGGAGATCTGGCGCAGCGCCACCAACGACCTGCAGACGGCGGAAAAGCTGGGTGACTTCGCATTTCCGCAGTCGTCGCACATGCTGCTGGGGTTGGCCGCAGGAACGCGGCTTTACTTCTGGGGTCGCATCGTTGACCTGAACGGGGAGTACGGCGCGTGGTTCCCTGCATCGGCTGGTGTCATGGGCGAGTCCAGCTGGGATGCAAGCGAATACCTGGAGTACTTCAAGGGGCAGATCGGGCGCGATGAGCTGGCGCAAGGTTTGGTGGAGGAAATCGACGGACTGCGCGACGGCATGGACGGCTTCCAGGCCCTGGTTGATCAGGAGCGTACGGAGCGGATTGCCGAGGACGAGGCGCTGGCGCAGGAGGTCACGACCGTCAAGGCCACCGCTGACGGCGCCGCCGCCGGCGTGCAGCAGACCAGCACGGCGCTGGTGAGCCTCGATGGCAAGCTGCAGGCCACCTGGACGGTCCAGGCGCAGGTGGCACAGGACGGTAAGGTGTACGCAGCAGGCATGACGCTGGGCGCTTACACCGACGAAGGCGGCCAGGTTCAAACGTCGGTCTACTTCCTGGCCGATCGCTTCGCCTTTCTGAGCCTGGCCAACGGGGAGATATCGACCCCCTTCGTGGTCCAGAACGGGCAGACCTTCCTGAATCAGGCATTCATCGGAACGGCCTGGATCAAGAGCGCGCAGATCGAGAGCCTGGACGCTGGGAAGATCGTGGTAGGCGTTATGAGCGCCGACCGGATCAGCACCAATACTCTGGTGGCGAAGCTGGCCAGCATCACGACGGCCTACATCACCACGGCACATATCGGTGTGGCGCAGGTTGACACCCTGCGACTGGCGTCCGGGGCGGTGGTGGCGGGTTCGCATAGCGTGATCAATACCAGTTGGGGCTCGTCCGGGTCCACGCTGGTGACGATTGCGACCGGCAGTATCTACCTGCCTTACGGCGGGGCCGTGACGGCGTTCTTCCAGTACGCGCAGTCGGGGGGCAGCTACCCCAGCGGCCGGAACACGATCGTCACGATCGACGGGGAGATTGTTCCCAATGCCGTGACGAACACGGCAGACGGGGCCGCGATGTTCACGTGGATCAGCAAGGCGTTCTCCAGTGGCAAGACCGTCGCGTGGTCGATCCAGGTCCGGCGTCCGGTGGATGGCACATCCAGCATGAGCGGTCGCGCCGCGCTGCTGGCTTTCCAGAGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
20712a07a7c1233044040095e0f50d944efd11672a0f936f893b0b09809a5264
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7562
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Specific integration of phage PHB09 decrease the virulence of Bordetella bronchiseptica Chen,Y., Yang,L. and Wu,B. 2015-07-30 — GenBank