Protein

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Genbank accession
QEA09972.1 [GenBank]
Protein name
receptor-binding tail protein
RBP type
TSP
Evidence DepoScope
Probability 0,97
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MGFFAGKYSDGKTVLSLNTESGGDINRHYSPNNNSIFHSDMPFVLVDGTYEAGLGNAGNGFFVCQMPSDIVNIKSNDPGRVILTAIEINGTHRAFLNGTQSKIGQTIVATQADPFRSFASVSQTSGFAFGNSLASGTYNYNPSIGHEESISRSGTGGTTLHSTYHGIVRPGAGAPVGVTVAEAFAQLGFPTNSSTVPVDGNNPYYWDPGWMSPLGAAHRGHDWFYVCNSNIRGYGGVRQGLPGNVNTMYHDGGNRFVCRGSTTNLANQSGDSTILQDWYNITPTKVIWYVLNLRYSNGGMSISGNPFTGSDILISPSNFIIKGVSLPNTGYKFINQNAFGNLGYRPDMEYIGNNAAYTGVFGDTTARCELVGSSNGGLWSPVDYGGAKSQISIYRFGVGKQWYVNSNDNTIGNEHGVVWGPSAVPLRLFGGNVGSSYMGDDITPSYPGTGDRYVGLSTIGLGIPGGNATVILTTEVISGNLNCAGVPANTWNNGVFQVQGRRAYSYSGGDAIFHQILTLPVGYLVPFHTTSAFRYTPNNALSRNSFIYTVKNLGNGNVELGVVMHVSLGSAVFLPRLRVTVQRLT
Physico‐chemical
properties
protein length:585 AA
molecular weight: 62415,72260 Da
isoelectric point:7,69261
aromaticity:0,11282
hydropathy:-0,16427

Domains

Domains [InterPro]
IPR059609
RBD
1–585
IPR059609
QEA09972.1
1 585
Architecture
RBD
RBD 1-585
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QEA09972.1
1 585
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0620
Central domain 11 225 216 0,4574
C-terminal 226 585 359 0,7364
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-225
C-terminal
226-585

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage VSe12
[NCBI] 		2847284 Uroviricota > Caudoviricetes > Demerecviridae > Tequintavirus > Tequintavirus VSe12
Host Salmonella enteritidis
[NCBI] 		149539 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QEA09972.1 [NCBI]
Genbank nucleotide accession
MN022787 [NCBI]
CDS location
range 106556 -> 108313
strand -
CDS
ATGGGTTTTTTCGCTGGAAAATATAGCGATGGTAAGACCGTACTATCCTTAAATACTGAATCTGGTGGTGACATTAATCGTCACTATAGTCCAAATAATAATAGTATTTTTCATAGTGATATGCCATTTGTCCTAGTTGATGGTACTTATGAGGCAGGATTAGGTAATGCCGGGAATGGGTTTTTTGTATGTCAAATGCCTTCTGATATAGTAAATATTAAATCTAACGATCCTGGTAGAGTTATATTAACTGCTATTGAAATTAATGGTACTCACAGAGCTTTTCTTAATGGTACTCAGAGTAAAATTGGTCAAACTATAGTTGCCACTCAAGCAGATCCCTTTAGATCTTTTGCTAGTGTTTCTCAAACCAGTGGATTTGCCTTTGGTAATAGCCTAGCATCTGGAACTTATAATTATAATCCCTCTATAGGGCACGAAGAATCTATCTCTAGGAGTGGTACAGGGGGTACTACGTTACATAGTACCTACCATGGTATAGTTAGGCCTGGTGCGGGAGCTCCTGTAGGTGTTACTGTTGCAGAAGCTTTTGCACAATTAGGGTTTCCTACTAACAGTAGCACAGTACCTGTAGATGGGAATAACCCGTACTATTGGGATCCTGGATGGATGTCGCCTCTAGGAGCAGCACATAGAGGGCATGATTGGTTTTATGTTTGTAATTCTAATATACGTGGATATGGTGGAGTTAGACAAGGGCTCCCAGGTAATGTAAATACTATGTACCACGACGGCGGTAATAGATTTGTTTGTAGGGGATCTACTACTAATCTGGCCAACCAGTCGGGTGACTCTACAATACTACAGGACTGGTATAATATAACTCCTACTAAGGTTATTTGGTATGTTCTTAATTTAAGGTACTCGAATGGTGGAATGAGTATTTCAGGCAATCCCTTTACTGGTTCTGATATTCTTATATCTCCTTCTAACTTCATAATTAAAGGGGTAAGTCTCCCTAATACCGGGTATAAATTTATAAATCAGAATGCTTTTGGTAACCTAGGTTACCGTCCTGATATGGAGTATATAGGGAATAACGCAGCGTATACCGGAGTTTTTGGTGATACCACGGCAAGGTGTGAACTTGTAGGGTCTAGTAATGGAGGATTATGGTCTCCTGTAGATTATGGGGGAGCTAAATCACAGATTAGCATTTATAGGTTCGGAGTAGGTAAACAGTGGTATGTAAACTCTAATGATAATACTATTGGTAACGAGCATGGGGTTGTTTGGGGACCATCAGCAGTTCCACTGCGACTTTTTGGTGGAAATGTAGGTAGTTCTTATATGGGGGATGATATTACTCCCAGCTACCCAGGAACGGGTGATAGATATGTTGGTCTATCAACTATTGGGCTAGGTATACCAGGCGGAAATGCTACAGTAATTCTTACTACTGAAGTTATATCAGGTAATCTTAATTGTGCGGGTGTTCCCGCTAATACATGGAATAATGGTGTGTTCCAAGTTCAAGGAAGAAGAGCATATAGCTATAGCGGCGGGGATGCAATATTCCACCAGATTTTAACGCTACCTGTGGGCTATCTAGTACCTTTTCATACTACATCTGCTTTTAGATATACACCTAACAATGCTCTAAGTAGAAACAGTTTTATATATACTGTTAAAAATCTAGGAAACGGAAACGTAGAGTTAGGAGTAGTTATGCACGTGAGTTTGGGTAGCGCAGTTTTCCTACCTAGATTAAGAGTAACAGTTCAACGCCTTACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
23545b79015a1114e28869ed27a6112456d2509fb16f7f24ce135011a24545ee
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2378
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Salmonella bacteriophage VSe12 Denisenko,E., Volozhantsev,N., Kislichkina,A., Verevkin,V., Myakinina,V. and Krasilnikova,V. 2018-05-24 — GenBank