Protein

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Genbank accession
YP_009811965.1 [GenBank]
Protein name
tail protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAFDGAIKSLMQGVSQQVPRERLDGQVSVQLNRLSDVVNGNRRRPGARYLADVPTTSQYDDRVFASYVDAQDTSNHVIINTETGQLVILSEDFTTTLHSSTQTYLVASAASAVQTASLRGYLYLANTEKAPAKVYGSTTQQDPAKTGFYFVRTPAFQKEYDITLSNSTGTYLYQYTTPKADGTTPGSTDPVAETKPSYIIGRLVTLINAATGTHGVTATQYDAYMFLSSNTTSLSVTTNAGSTYATASNQSRVNLVSDLPARLPATGSGALVAVGTTERNFVWYQYDYSTSVWKEAGAYGSPTGFSNMPIRISLDGTYTVETPTYEGRLSGSDETNEDPGFIDNGVTGFGAYQGRLVILAGPEVCMSAAGNPLRWYRSTVTALLSDDPINIFSGAATSTNFRHCVQFNKDLLLFARSCQAVVPSSNAAITPQTAQIVITSGYTTDTLAQPGVVGRSVLYSMPRTENFAGVLEIIPSNTTDSQYTSNDITAHIPRYLPGRIRSIVSSTTGNSSAFVCTGDNRSLFIQDYLWSGDEKVQSAWHQWSLPYPVVCIWFVRDRIYIGLRDGTALLVVTVEPQAGTTINNYVRPFSDVYMRVTITNKQFVLPERLRDAVTAGERLFITFADTSMGGMWVGYESINPSTFVVTTVRNVPDGEYFVGLRYTSVLSPTPPLVRDANGVVIGTSRTLLTRYELTLKDSGEFHAVITDSSRTLTDGEYSSLVYSSTELLPNNPTDASLGRAIIPVRAQAQDTVATFEANADTDLCILDIEYVLQYRARRKRI
Physico‐chemical
properties
protein length:781 AA
molecular weight: 85186,16590 Da
isoelectric point:5,33374
aromaticity:0,09731
hydropathy:-0,16940

Domains

Domains [InterPro]
DC_0058
STR
1–781
DC_0058
IPR058003
TTP
5–781
IPR058003
YP_009811965.1
1 781
Architecture
STR
STR 1-781
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009811965.1
1 781
Domain Start End Length (AA) Confidence
N-terminal 1 138 138 0,9703
Central domain 139 337 200 0,2024
C-terminal 338 781 443 0,1324
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-138
Central
139-337
C-terminal
338-781

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage Lelidair
[NCBI] 		2320195 Uroviricota > Caudoviricetes > Autographivirales > Corkvirinae > Phimunavirus
Host Pectobacterium atrosepticum
[NCBI] 		29471 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009811965.1 [NCBI]
Genbank nucleotide accession
NC_048058 [NCBI]
CDS location
range 26960 -> 29305
strand +
CDS
TTGGCGTTCGACGGAGCAATAAAATCCCTAATGCAGGGCGTAAGTCAGCAGGTACCCCGCGAGCGCCTAGATGGACAAGTATCTGTACAGTTAAACCGTTTATCCGATGTGGTGAACGGTAACCGTAGACGCCCCGGTGCTCGGTACTTAGCAGATGTACCTACTACTTCGCAGTACGATGACCGTGTATTCGCATCGTACGTAGATGCGCAGGACACATCCAATCACGTTATTATTAATACAGAGACGGGGCAGTTAGTAATTCTATCAGAAGACTTCACTACTACCCTGCACAGCAGCACACAGACGTACCTAGTGGCTTCTGCTGCCTCTGCTGTGCAGACAGCCTCACTACGGGGTTACCTGTACCTAGCGAACACTGAGAAGGCTCCTGCGAAGGTTTACGGAAGCACTACACAACAAGACCCAGCTAAGACTGGCTTCTACTTTGTACGTACACCTGCATTCCAGAAAGAGTACGACATAACACTGAGTAACTCAACAGGTACATACCTGTATCAGTACACTACCCCGAAAGCAGACGGAACTACTCCGGGTAGTACAGACCCCGTGGCGGAGACTAAACCCAGTTATATTATTGGTAGACTAGTTACACTTATTAATGCTGCGACTGGTACACATGGCGTTACAGCTACCCAGTACGATGCTTATATGTTCCTGAGTAGCAATACGACCTCTTTATCTGTAACCACTAATGCCGGAAGTACTTATGCTACGGCTAGTAATCAGTCACGAGTTAATCTTGTGTCTGACTTACCCGCACGTTTACCAGCCACTGGTAGCGGTGCATTAGTGGCGGTGGGTACAACAGAACGTAACTTCGTATGGTACCAGTACGATTACTCAACCTCGGTATGGAAAGAGGCAGGTGCGTACGGTAGTCCTACAGGCTTCTCAAATATGCCTATCCGCATCTCGCTGGATGGTACATACACAGTAGAGACCCCCACGTACGAGGGACGTCTGTCAGGCTCTGATGAGACTAACGAGGACCCCGGCTTTATTGATAATGGGGTAACTGGTTTCGGTGCATACCAAGGCCGCCTAGTTATTCTGGCTGGCCCAGAGGTGTGTATGTCAGCAGCAGGGAATCCCCTGCGTTGGTACCGTAGTACAGTAACAGCACTGCTCTCAGACGACCCTATTAATATCTTCTCAGGCGCAGCAACAAGTACTAACTTCCGACACTGTGTGCAGTTCAACAAGGACTTACTCCTGTTTGCTCGTTCGTGTCAGGCGGTGGTTCCTAGTAGCAATGCTGCTATCACTCCGCAGACGGCGCAGATAGTTATCACCTCTGGATACACCACTGATACACTCGCTCAGCCGGGTGTGGTAGGGCGTTCTGTGTTGTACAGTATGCCCCGCACTGAGAACTTTGCAGGTGTGTTGGAGATTATCCCAAGCAACACTACGGACTCCCAATACACCAGCAATGATATTACAGCACATATCCCTAGGTATTTACCGGGACGCATACGTAGTATTGTATCCAGTACCACCGGGAACTCCAGTGCGTTTGTCTGTACGGGAGATAACCGGAGCCTGTTCATCCAAGATTATTTATGGTCGGGTGATGAGAAAGTGCAGAGTGCTTGGCACCAATGGTCATTACCGTACCCCGTGGTATGTATTTGGTTTGTACGTGACAGGATTTATATCGGTCTACGGGACGGCACAGCACTCCTAGTAGTTACAGTTGAACCGCAAGCGGGTACCACTATTAACAACTACGTACGTCCGTTCTCCGATGTGTACATGCGTGTTACTATCACCAATAAACAGTTCGTCCTACCGGAACGCTTACGAGACGCTGTAACGGCTGGGGAACGCTTGTTCATTACCTTTGCTGATACAAGCATGGGGGGAATGTGGGTAGGTTACGAGAGTATCAATCCAAGCACCTTTGTTGTGACCACAGTACGTAATGTTCCAGACGGGGAGTACTTCGTGGGCTTACGCTACACCAGTGTACTCAGTCCTACGCCCCCGCTGGTGCGGGATGCTAATGGTGTTGTTATAGGCACTAGCCGTACGCTGTTAACACGATACGAGTTAACCCTTAAAGACTCTGGAGAGTTCCACGCCGTAATCACGGATAGCTCTAGAACACTAACAGATGGGGAGTACTCCAGCCTAGTGTACAGTAGCACTGAGCTATTGCCGAATAACCCAACCGATGCTTCATTAGGTAGGGCTATTATACCGGTACGTGCTCAAGCACAGGACACTGTGGCTACCTTTGAAGCTAATGCTGATACCGACTTATGTATCTTAGATATTGAGTACGTCCTGCAATACAGGGCACGGAGGAAAAGAATATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
a9201e4645d148832b12c3cb865fe6af6fea11db8f311ce65feeaee6edaaa779
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8741
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
SRE bacteriophages Carstens,A.B., Djurhuus,A.M., Kot,W. and Hansen,L.H. 2015-08-27 — GenBank