Protein

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Genbank accession
YP_009277043.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MTTQIDGRQILDNSIPDQKLSTNANNFLGNVITQNTTLNVPIQYATINDALNYLSTKTIMRGAIVTIKVADGTYTLTSGITFAHSQGERIKIIGNILNPGNVLIQSPADGFYVPQGFKLAEIDGFKFLKTGAASVNIGVYTDGGSIMKCGPHLIVDGFYHGIAARNGGNINAAGTASDYVQVFNGGDTCIWAYERSFVNAQYARVSGAKDTANNLGSGFLAEFSSVIDATGSKSFNNYLNGYSAFSSSAIRAWGTECYGNGVGNASGKTSGYYAAENGSIEVSQSNCHDNTGYGDLSDSDGKVYGRVGAVYTNNSLGAYKEIFELQSSGKVNLNSGSLTIDGTTAYNANGFDTYFDINGKTGQFAIRRYLVAGVEKCREQWREDVQRLVWNGPAGNSVTWNPTDGDIALGLSAPAVGATKGFLQIPKMAGKPTGTPASVQTGYSPIVHDTTNNRLWLWNGSAWLGTATLTS
Physico‐chemical
properties
protein length:471 AA
molecular weight: 49978,81940 Da
isoelectric point:5,98682
aromaticity:0,10191
hydropathy:-0,21444

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009277043.1
1 471
Domain Start End Length (AA) Confidence
N-terminal 1 43 43 0,9416
Central domain 44 353 311 0,9691
C-terminal 354 471 117 0,9169
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-43
Central
44-353
C-terminal
354-471

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage RSP15
[NCBI] 		1785960 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009277043.1 [NCBI]
Genbank nucleotide accession
NC_030948.1 [NCBI]
CDS location
range 72026 -> 73441
strand -
CDS
ATGACAACACAGATTGACGGAAGACAGATTCTGGATAACTCAATCCCAGATCAGAAGCTTTCCACAAATGCGAACAATTTCTTGGGGAACGTTATCACCCAAAACACGACGTTGAACGTTCCTATTCAGTATGCAACTATTAATGACGCCCTCAACTATCTTTCAACAAAAACGATTATGAGGGGTGCCATCGTCACAATCAAAGTTGCGGATGGTACATATACCCTAACTTCAGGAATTACTTTCGCTCATTCTCAGGGCGAAAGAATCAAAATCATCGGCAACATCTTGAATCCGGGTAATGTTCTGATCCAATCCCCGGCTGATGGTTTTTATGTTCCTCAGGGCTTCAAGCTTGCTGAAATCGATGGCTTCAAATTCCTAAAGACTGGTGCTGCTTCTGTCAACATCGGTGTCTATACAGACGGTGGAAGCATCATGAAATGCGGACCCCATCTGATCGTTGATGGTTTCTATCATGGGATTGCAGCTAGGAACGGTGGGAATATCAATGCAGCCGGTACAGCCTCTGATTACGTTCAAGTATTCAACGGTGGTGATACCTGCATTTGGGCATATGAACGTTCTTTTGTAAATGCACAATATGCAAGAGTTAGCGGGGCAAAGGATACGGCCAACAACCTAGGAAGCGGTTTCCTAGCAGAATTCTCAAGCGTTATTGATGCTACTGGCTCCAAATCTTTCAATAACTACCTAAATGGTTACAGTGCATTCTCAAGTAGTGCCATCCGTGCATGGGGTACTGAATGTTATGGGAATGGTGTCGGCAATGCCTCTGGAAAAACTTCGGGTTATTACGCGGCTGAGAATGGTTCTATTGAGGTATCCCAATCAAACTGCCATGACAATACCGGTTATGGTGATTTGTCAGATTCTGATGGGAAGGTTTACGGAAGAGTTGGAGCGGTCTACACCAATAATTCATTGGGTGCTTATAAGGAAATCTTTGAACTTCAATCCTCAGGAAAGGTAAACCTTAATTCGGGTAGCCTGACCATTGATGGGACGACAGCATATAACGCAAACGGCTTTGACACGTATTTTGATATCAACGGCAAAACAGGTCAATTTGCTATTAGACGTTATCTCGTTGCCGGTGTTGAAAAATGTAGAGAGCAATGGAGAGAGGATGTCCAACGTCTAGTTTGGAATGGTCCTGCGGGCAATTCCGTAACTTGGAATCCGACTGATGGTGATATTGCTCTTGGCCTGTCCGCTCCTGCGGTTGGAGCAACCAAAGGCTTCTTGCAGATTCCGAAAATGGCAGGCAAACCAACCGGAACCCCGGCTTCTGTTCAGACCGGCTATTCCCCAATCGTGCATGACACGACGAATAACAGATTGTGGTTGTGGAATGGTTCTGCATGGCTTGGGACTGCGACTCTAACCTCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3b50ddd0cd76ffb65252a55216854c756d28d0255eef40fa38d9a08d16bffba8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8088
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome analysis of a phage RSP15 infecting the phytopathogen Ralstonia solanacearum Kawasaki,T., Fujie,M., Chatchawankanphanich,O., Ogata,H. and Yamada,T. 2010-03 — GenBank