Protein

View in Explore
Genbank accession
ARV77528.1 [GenBank]
Protein name
putative tailspike protein
RBP type
TF
Evidence RBPdetect
Probability 0,89
Protein sequence
MGSQPSTQTTVSKVELPEWVDKAAQQNLEIANQLAEKPYVGYDKPLTAGFNSTQQQALNNATQNAGAWAGTLGNAISMSNPTAGYTSAMDKAAQTAALTGQYGQNMGAASGMIKGAMDPLNASTSVAQQGTQFQAPSFLQGDVSKYMNPYLTEVENRALDNQSRAFANATNQIGANAVSAGAFGGSRHGIAEGVAASENARSMGDLSAQLRAQGFDAASGLMQNDMTRAMQAEQMRQAAGSQLASNAGLQGQLGQTLGNQSALDQQTRDAAARTAAAIAQGQQDTRLQAGNQIGNLANMGNTMSNQNSALLAAMGGQQREITQAQLQEDYMKWKEKQDHDLQQLNLRLAAVGATPYGSTQTQQTTGAGGGNTGMSIFGSVLGMIPFLGGLSDETTKTDIKKLGKDEATGLNVYAFRYKGDPKTYPKSIGPMAQEVEKVAPELVREMGGKKVVNYGALGALGFGAGIRK
Physico‐chemical
properties
protein length:468 AA
molecular weight: 48900,87280 Da
isoelectric point:6,22554
aromaticity:0,05342
hydropathy:-0,46154

Domains

Domains [InterPro]
DC_0745
STR
1–261
DC_0745 IPR030392
DC_0745
STR
225–464
DC_0745
IPR030392
CHP
391–468
IPR030392
ARV77528.1
1 468
Architecture
STR
STR 1-468
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Sinorhizobium phage phiM5
[NCBI] 		2005789 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Sinorhizobium meliloti
[NCBI] 		382 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ARV77528.1 [NCBI]
Genbank nucleotide accession
MF074189 [NCBI]
CDS location
range 16228 -> 17634
strand +
CDS
ATGGGTAGCCAACCGAGCACGCAGACCACTGTCAGCAAAGTCGAACTCCCCGAGTGGGTTGACAAGGCTGCGCAGCAGAACCTCGAAATCGCCAACCAGCTCGCCGAGAAGCCCTACGTCGGCTATGACAAGCCGCTGACAGCCGGCTTCAACTCGACGCAGCAGCAGGCGCTCAACAACGCCACGCAGAACGCGGGTGCTTGGGCCGGCACGCTCGGGAACGCCATCAGCATGTCCAACCCTACCGCCGGCTACACGTCAGCGATGGACAAGGCCGCGCAGACCGCCGCGCTGACAGGCCAGTACGGCCAGAACATGGGCGCCGCGTCCGGGATGATTAAAGGCGCGATGGACCCGCTCAACGCCTCTACCTCGGTGGCGCAGCAGGGCACGCAGTTTCAGGCGCCGAGCTTCCTGCAGGGCGACGTCAGCAAATACATGAACCCGTATCTGACAGAGGTCGAAAACCGCGCTCTCGACAACCAGAGCCGTGCCTTCGCCAACGCGACAAACCAGATCGGTGCCAACGCTGTCAGCGCCGGCGCATTCGGCGGCTCGCGACACGGGATTGCCGAAGGCGTCGCGGCCTCGGAGAATGCTCGCTCGATGGGCGACCTCTCGGCGCAGCTCCGCGCCCAAGGCTTCGACGCTGCCAGCGGTCTCATGCAGAATGACATGACACGCGCCATGCAGGCCGAACAGATGCGGCAGGCCGCGGGCTCGCAGCTCGCTTCGAACGCCGGACTGCAGGGGCAGCTTGGTCAGACGCTCGGCAATCAGTCGGCTCTCGACCAGCAGACGCGTGATGCCGCAGCTAGGACCGCCGCAGCCATCGCACAAGGCCAGCAGGACACGCGCCTGCAGGCTGGCAACCAAATCGGCAATCTGGCGAACATGGGTAACACCATGTCAAACCAGAATTCGGCGCTCTTGGCGGCTATGGGCGGGCAGCAGCGTGAAATCACGCAGGCGCAGCTCCAAGAAGACTACATGAAGTGGAAAGAGAAGCAGGATCACGACCTGCAGCAGCTCAATCTCAGGCTCGCGGCCGTCGGTGCAACGCCTTATGGCAGCACGCAGACGCAGCAGACGACGGGCGCCGGCGGCGGTAACACGGGCATGTCGATCTTCGGCTCGGTGCTCGGGATGATCCCGTTCCTCGGCGGCCTGTCAGACGAGACCACGAAAACTGACATCAAGAAACTCGGCAAGGACGAGGCCACGGGTCTGAACGTCTACGCCTTCCGCTACAAGGGCGATCCGAAGACCTATCCGAAGTCGATTGGTCCGATGGCGCAGGAAGTCGAAAAGGTCGCGCCGGAGCTTGTCAGGGAAATGGGCGGCAAAAAGGTTGTCAACTACGGCGCCCTCGGTGCGCTCGGCTTCGGTGCCGGTATCAGGAAGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
dcebbf54d9ce0f9a5992cc1c176cbe8e14314b8328da948ced42a5927450091d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8107
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Structure, proteome and genome of Sinorhizobium meliloti phage phiM5: a virus with LUZ24-like morphology and a highly mosaic genome Johnson,M.C., Sena-Velez,M., Washburn,B.K., Platt,G.N., Lu,S., Brewer,T.E., Lynn,J.S., Stroupe,M.E. and Jones,K.M. 2017-12 — GenBank