Protein

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Genbank accession
ASZ78213.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,88
Protein sequence
MALVIHYTRNEDGTFDAKRYHDNPMNFVVNHVPDGVPVRVFIDEIGEDNDVTEDFEALKENATFHIVESAGGGAIKGVMKVFSVILKPLAKLLSPSVKGASSNLANSQADSPNNSLTDRNNKARPYERSYDICGTVQTIPNNLMTTYKVFNAAGKIVEYGYYDAGRGYLDIRPEDITDGDTRVSDITGTSVAVYAPYTSPNNTSTPQVMVGDPIEQGLYITVESNEVDGVVLKAPNGLGISFSYMSGYPSLSGNIGTIYDPTGGSDFSGVLVPNDTFSLVSAWTNTDVDLSGGGYQVLSVSEGTVTFIVPGGLIGRWQEIRPGSFFRGDGEASLQPDNTYEKTLTDWVSINRTEVERIVANIAAANGMYKDNGMYKDNGKSKTLASVTAEIQYQLLDENSTPYGPIYTAQGTVSGRTPDYNGVTIYADLPVVSRVRVRARRVTDLDFNFEGSVVDEITYVNLYGQTRDNTPHYGNRTTVHSMRKQTPRAAEVKQPQLRMIATEMVYKYLGNGVFEDTMTPNTQAVQSLIRLARDPDVGGLNLTVRNMDKLLAVQNEVEAYFGDKQAGEFCYTFDDYKTTMQDIVSTIADAIFCTPYRRGADILLDFERPRMGPEMVFTHRSKAGTSEKWTRTFNDAQVFDSLKFSYIDPKTNVKETITIPETGGLKTETYDSKGIRNYKQAFWAANRRHQKNILKKISVSFTATEEGIFALPNRAVSVVKGSRMATYDGYVTAVNGLTVELSQPVKFTSGDDHSLVLKLRDGGVQSVRVVPGAHDRQVIMTSVPQEAIYTGNSALKTEFSFGNEARHNAQMILVSTVDPGDDRTVKITGFNYDKDFYKFDNVPPFGRAFSNGFDNGFN
Physico‐chemical
properties
protein length:858 AA
molecular weight: 94605,60840 Da
isoelectric point:5,23347
aromaticity:0,09790
hydropathy:-0,38462

Domains

Domains [InterPro]
DC_0118
STR
1–692
DC_0118 DC_0808
NF040662
Unmapped
353–838
NF040662
ASZ78213.1
1 858
Architecture
STR
RBD
STR 1-692 | RBD 709-852 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ASZ78213.1
1 858
Domain Start End Length (AA) Confidence
N-terminal 1 234 234 0,9810
Central domain 235 433 200 0,6891
C-terminal 434 858 424 0,1571
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-234
Central
235-433
C-terminal
434-858

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage ST1
[NCBI] 		2025822 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ASZ78213.1 [NCBI]
Genbank nucleotide accession
MF001366.1 [NCBI]
CDS location
range 14873 -> 17449
strand -
CDS
TTGGCGCTAGTAATCCACTACACCCGCAACGAAGACGGCACATTTGACGCTAAACGTTATCACGATAATCCGATGAACTTCGTCGTGAACCATGTTCCGGACGGGGTTCCGGTACGTGTTTTCATTGACGAAATCGGAGAAGATAACGACGTAACAGAAGACTTCGAAGCACTGAAAGAAAACGCGACTTTCCACATTGTAGAATCTGCCGGTGGGGGGGCTATTAAAGGCGTCATGAAGGTTTTTAGCGTTATCCTTAAACCGCTGGCGAAACTACTATCACCATCCGTGAAAGGGGCGTCCTCTAACCTGGCGAACTCGCAGGCGGATTCCCCGAACAACAGTCTCACCGACCGCAACAACAAGGCGCGCCCGTACGAGCGCAGTTACGACATCTGCGGGACGGTGCAAACCATCCCCAATAACCTTATGACTACTTACAAGGTGTTTAACGCCGCCGGTAAAATTGTAGAGTACGGTTATTACGACGCCGGTCGCGGCTATCTCGACATACGCCCTGAAGATATCACTGACGGGGACACCCGTGTATCGGATATAACAGGCACGTCGGTTGCCGTGTACGCGCCGTATACGTCACCCAATAACACGTCTACACCCCAGGTCATGGTCGGAGACCCGATAGAGCAGGGCTTGTATATTACCGTAGAATCTAACGAAGTCGATGGTGTGGTTCTTAAAGCACCCAACGGTCTGGGTATTTCTTTCTCTTACATGTCCGGGTATCCGTCTTTGTCCGGGAACATCGGCACGATATACGACCCAACAGGTGGTTCGGATTTTTCTGGAGTGTTGGTGCCTAATGACACGTTTTCGTTGGTGTCAGCGTGGACAAATACGGACGTCGACTTGTCCGGCGGCGGGTATCAGGTGTTAAGCGTATCCGAAGGGACCGTTACCTTTATCGTGCCTGGCGGCCTTATCGGGCGATGGCAAGAAATAAGACCCGGTTCATTTTTCCGCGGTGATGGAGAGGCCTCGCTGCAACCAGACAACACGTATGAGAAAACATTAACCGATTGGGTTTCAATAAACCGTACCGAGGTTGAGCGTATAGTCGCCAATATCGCCGCCGCGAACGGCATGTATAAAGACAACGGCATGTATAAAGACAACGGCAAATCGAAAACACTGGCGTCAGTCACCGCCGAAATACAGTATCAATTGCTTGATGAAAACAGCACTCCTTACGGACCGATATATACTGCGCAAGGAACTGTGTCCGGGCGTACACCGGACTACAACGGCGTCACTATTTACGCCGACCTGCCGGTTGTGTCACGGGTGCGGGTGCGCGCCAGAAGGGTAACAGACCTGGACTTTAATTTCGAGGGGTCTGTAGTTGATGAGATAACGTACGTTAACTTATACGGGCAAACACGTGACAACACCCCACACTACGGCAACAGAACAACAGTACACTCGATGCGCAAGCAGACCCCACGTGCTGCGGAAGTAAAGCAACCGCAGTTGCGTATGATTGCTACTGAAATGGTGTACAAATACCTCGGTAACGGTGTTTTCGAAGATACGATGACACCTAATACACAGGCTGTACAATCCCTCATCCGCCTGGCGCGTGACCCGGATGTTGGCGGTTTAAACCTGACAGTACGCAACATGGATAAGTTACTTGCCGTGCAGAACGAGGTTGAAGCGTATTTTGGCGACAAACAGGCTGGAGAATTTTGTTACACGTTTGATGACTATAAAACCACTATGCAGGATATAGTTAGTACTATAGCCGACGCTATCTTCTGTACTCCATATAGGCGTGGGGCGGATATCCTTCTCGATTTTGAACGCCCTCGCATGGGTCCTGAGATGGTGTTCACCCACCGAAGCAAGGCTGGTACTTCCGAAAAATGGACCAGAACCTTTAACGATGCTCAGGTGTTCGATAGTCTTAAATTCTCGTACATAGACCCTAAAACAAACGTTAAAGAAACCATAACAATACCTGAAACCGGGGGCCTTAAAACGGAGACTTATGACTCAAAAGGGATCCGCAACTATAAGCAGGCTTTCTGGGCGGCAAACCGTCGCCACCAGAAGAACATTTTAAAGAAAATTTCGGTGTCGTTTACTGCCACTGAAGAGGGTATTTTTGCCCTTCCGAATCGTGCCGTTAGTGTGGTTAAGGGTTCGCGTATGGCTACTTACGACGGCTACGTAACCGCGGTTAACGGTCTTACCGTAGAGCTATCCCAGCCGGTTAAGTTCACATCCGGAGATGACCATTCTTTGGTTCTAAAGTTACGTGATGGCGGAGTCCAAAGTGTTCGTGTCGTCCCTGGTGCACATGACCGACAAGTAATTATGACGTCGGTGCCGCAGGAAGCTATTTACACGGGTAATAGCGCCCTGAAAACTGAATTTTCATTCGGCAACGAAGCAAGGCATAATGCTCAGATGATTCTTGTTTCTACGGTAGACCCTGGCGATGACAGAACAGTCAAAATAACCGGGTTTAACTATGACAAGGATTTCTATAAGTTTGACAACGTGCCTCCTTTCGGTCGTGCGTTCTCTAACGGATTCGATAACGGTTTTAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3d116a81a2a3f2b338c69b67b5f6a30f2e0deace6493bd56b6d57a154fd14cb6
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8235
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Lytic Bacteriophage ST1 Infecting Salmonella Typhimurium Isolates Kim,D., Kim,Y.J., Han,B.K. and Kim,H. 2012-01-15 — GenBank