Protein

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UniProt accession
A0A8S5VFF5 [UniProt]
Protein name
Collagen alpha 1(VIII) chain protein
RBP type
TF
Evidence RBPdetect
Probability 0,87
TF
Evidence RBPdetect2
Probability 0,78
Protein sequence
MTIEQRVAVLEEIFSKLQDYYTSAYSGEEIDARLASAGVPVGITKEYKSVAEMNQDFTGTDVQRGQFVLILPDSTSSADYGKVYLKGTANWVYAFTLTTLTSIKGPIGPPGKNGVKGDPGEAGSSFAILGYFDTLDALKAAVPNPKAGDVYGVGTAPPYNIYIWDSVHGKWVGNGNLQGPEGKQGIQGPEGKQGPEGKQGPPGPVGGSSNFVRYDAAQSLTDEQKAQARANIGANTVQGAVRYDAAQSLTDAQKTQARGNINAAPGGYGLGENTGKYIASRAVLDAIDKNGIYFYYNPDETIGNYPYGQSGAVLHICNDRCHTQFFFPSSTDTRYWMRTRYALSETWGAWEFVKVPMDLGVEYRTTERYLGKPVYTKLVDCGALPNATRKTVNHGATVEYMLRCAANCTAGYKDSLPYWYSDVDYCTVYASTTQIIFNTPKDLSDRTANAQIWYTKPDT
Physico‐chemical
properties
protein length:459 AA
molecular weight: 49904,98700 Da
isoelectric point:5,57144
aromaticity:0,11547
hydropathy:-0,44270

Domains

Domains [InterPro]
DC_1340
STR
45–438
DC_1340
G3DSA:1.20.5.320
STR
177–231
G3DSA:1.20.5.320 cd19958
A0A8S5VFF5
1 459
Architecture
STR
STR 45-438 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Siphoviridae sp. ct1da40
[NCBI] 		2825311 Uroviricota > Caudoviricetes >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
DAG05490.1 [NCBI]
Genbank nucleotide accession
BK016259 [NCBI]
CDS location
range 36500 -> 37879
strand -
CDS
ATGACGATTGAACAGAGAGTCGCAGTTTTGGAGGAGATATTCTCCAAGCTGCAAGACTATTACACATCCGCCTACTCCGGCGAGGAGATCGATGCGCGGCTGGCGTCCGCCGGTGTGCCGGTTGGCATCACAAAAGAGTACAAGAGCGTGGCCGAGATGAACCAGGACTTCACCGGCACTGACGTCCAACGCGGCCAGTTCGTCCTGATCCTGCCGGACAGCACGTCCTCCGCGGACTACGGAAAGGTGTACCTCAAGGGCACGGCCAACTGGGTGTATGCCTTCACGTTGACCACGCTAACGTCCATCAAAGGCCCCATTGGCCCTCCCGGCAAAAATGGCGTCAAGGGCGATCCCGGCGAGGCCGGTTCCAGCTTCGCCATTCTTGGCTACTTTGATACGCTGGACGCCCTCAAGGCAGCCGTCCCAAATCCCAAGGCCGGTGACGTGTACGGCGTGGGCACTGCGCCTCCGTACAACATCTACATCTGGGATTCCGTCCACGGCAAGTGGGTGGGCAACGGCAATCTTCAAGGCCCGGAGGGGAAGCAGGGTATTCAAGGCCCCGAGGGAAAACAGGGACCTGAGGGGAAGCAAGGCCCGCCCGGCCCCGTGGGCGGTTCCAGCAACTTTGTCCGCTACGACGCGGCGCAGAGCCTCACCGACGAGCAGAAAGCGCAGGCCCGGGCGAACATCGGGGCGAACACCGTACAAGGCGCGGTCCGCTATGACGCGGCGCAGAGCCTGACGGACGCACAGAAAACCCAGGCGAGGGGGAATATCAACGCTGCCCCCGGCGGGTACGGGTTAGGAGAAAATACTGGGAAATACATTGCATCGCGGGCCGTATTAGATGCAATTGATAAGAACGGAATCTACTTTTACTACAATCCGGACGAGACAATCGGCAACTATCCATACGGACAAAGTGGTGCTGTGCTTCATATCTGTAATGACAGATGCCATACACAATTCTTTTTCCCAAGTAGTACAGATACACGCTACTGGATGCGAACACGTTACGCGCTTTCAGAGACGTGGGGCGCATGGGAGTTTGTAAAAGTTCCGATGGACCTTGGCGTCGAGTACCGCACCACGGAGCGGTATCTGGGCAAGCCGGTGTATACAAAACTGGTTGACTGTGGCGCTCTGCCAAACGCCACACGCAAAACTGTAAATCACGGTGCTACTGTGGAATACATGCTGCGCTGTGCGGCTAACTGCACTGCTGGGTATAAGGACAGTCTACCGTATTGGTATAGTGATGTCGATTATTGCACGGTCTACGCCTCTACCACACAGATTATCTTCAACACTCCTAAAGACCTTTCAGACCGGACGGCAAATGCACAGATTTGGTACACCAAGCCAGACACATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a4305ca8df14d228c81359c88fcd7ba394d889a6e2b0f5d03eacce856211ff4a
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7330
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50