Protein

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Genbank accession
AGH56126.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MAFTQITGDNISTATNATITALAFQNTNSVLALPAGSTADRPTTPALGSIRYNSDDDNAEIYITNVDGSGTDGWAPVAGGGPSVGNDSIIRTNGTQLTEDAAVGAGAPNNDDKFSNGFTIGPITVSGATTTLTILADGNLVIF
Physico‐chemical
properties
protein length:143 AA
molecular weight: 14381,46880 Da
isoelectric point:4,05003
aromaticity:0,05594
hydropathy:-0,03147

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage Syn30
[NCBI] 		536474 Uroviricota > Caudoviricetes > Pantevenvirales > Leucotheavirus > Leucotheavirus syn30
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGH56126.1 [NCBI]
Genbank nucleotide accession
HQ634189.1 [NCBI]
CDS location
range 25048 -> 25479
strand -
CDS
ATGGCGTTCACTCAAATTACTGGAGATAATATCTCCACAGCAACAAATGCAACTATCACGGCACTAGCGTTTCAGAATACTAATTCTGTTTTAGCATTGCCTGCTGGATCAACTGCTGATCGTCCCACTACACCTGCATTAGGTTCTATTAGATATAATTCTGATGATGATAATGCAGAGATTTACATCACAAACGTTGATGGTTCTGGTACTGATGGATGGGCACCTGTTGCAGGTGGTGGACCTTCTGTAGGTAATGATTCGATCATTAGAACTAATGGAACTCAATTAACTGAAGACGCAGCAGTCGGTGCTGGTGCTCCTAATAATGATGATAAATTCTCTAACGGATTTACCATTGGACCTATCACAGTCTCTGGTGCCACGACTACATTAACCATCCTCGCTGATGGTAACTTGGTAATTTTTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
00ad3d90db4f6ca5c59c4b4040db9ab45f7f2492f0202cb2c04043c11468a027
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8922
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage Syn30 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank