Protein

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Genbank accession
CBW38040.1 [GenBank]
Protein name
putative head-binding domain of phage tailspike protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MISQFNQPHGSTSIFVNKQSIALNFGVTQDEVVYFAAGIDLSGYKVIYDESTQRAYSLPSGIVSGTTAISLDERAVLTHSAGSVDLGELAVSREEYVTLPGSFNFGHTINVKNELLVHDDEKYRWDGSLPKVVAAGSTPDNSGGVGTGAWIPVGINSLSGDGGWSRIGSEFGKSLKEHIQSLPSLSAVKYMTFVEYAALLAGNDTVNHDVKVQQVMDEAHELKCSVYFPTGRYVFDTAVNVWTYVRAVWGDGSAIITRRYGSQFSSPGVIDPAHDTRKLFRMMGGALGPQSIHGLIIDGNARSFTVPKHTDPDQTYPNQTYYGDVEPVDVGPYVFGPEGNTSVPGASYYNHDKKESGLTVFDMVFKDQPGGGVVGNGQNIRVFGNHFMGWYDHAVYIAGSNFASEGDGILCSDIVVTGNVFRNRINNRGNGAVKARFGVNRYAVTGNSFDIVDYCMAFEMGNGPATQPFGQIVVDGNVCTSDGMFMQIGNDIGTEWFSTNWLKSMTITNNTARSLDRIFLLGVSGSSSYIMDGFSVQVANNRFYAPSFLSVYTFMTNTEWMLNNNIVEITGTAMITGVDQSNINNSRIYLKDNVLGVLRTDVQGYAAVSNFQQVEISNNTLRNLYFQIGSYTTDLSIKGNTVNYTSALSSKNLALMYSSAGNGLITADISDNKFFGGVGRCQLKFSSSASLDCINNKFFTTSAPFLELHPAGYTPRVVRIKDNLMRGTGVLLAPLASGVSLSGAGNYMVISGNTLMANNPSAPENITLYQDTGAQSWVAHYETIRCVRNDFKSALLAINATGTAQSGLSTTNKFWFGDNATINTTVVCTYPAGNKANTDITQTVSV
Physico‐chemical
properties
protein length:846 AA
molecular weight: 91471,24820 Da
isoelectric point:5,49317
aromaticity:0,10520
hydropathy:-0,11962

Domains

Domains [InterPro]
G3DSA:3.30.2020.50
ATT
1–94
G3DSA:3.30.2020.50 G3DSA:2.10.10.80 IPR011050
DC_0369
STR
1–597
DC_0369
IPR040775
RBD
90–155
IPR040775
CBW38040.1
1 846
Architecture
ATT
STR
ATT 1-161 | STR 162-597 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
CBW38040.1
1 846
Domain Start End Length (AA) Confidence
N-terminal 1 208 208 0,9927
Central domain 209 820 613 0,9788
C-terminal 821 846 25 0,7871
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-208
Central
209-820
C-terminal
821-846

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage Vi01
[NCBI] 		2991283 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica subsp. enterica serovar Typhi
[NCBI] 		90370 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Salmonella

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
CBW38040.1 [NCBI]
Genbank nucleotide accession
FQ312032 [NCBI]
CDS location
range 124070 -> 126610
strand -
CDS
ATGATTTCTCAATTCAATCAGCCACACGGCTCCACTTCAATATTTGTTAACAAACAATCTATTGCTCTGAATTTCGGTGTCACCCAAGATGAAGTTGTTTATTTCGCTGCTGGTATTGACCTCAGTGGATACAAAGTAATCTATGATGAATCGACTCAACGGGCTTATTCTCTCCCTTCCGGTATTGTTTCAGGGACAACTGCAATTAGTCTGGATGAAAGAGCCGTCCTCACTCATTCCGCTGGTTCTGTTGACCTTGGGGAATTAGCAGTAAGCCGCGAAGAATATGTGACTTTACCTGGTTCTTTTAATTTCGGCCATACCATTAATGTGAAAAATGAACTTCTTGTTCACGATGATGAAAAATATCGATGGGATGGTTCTTTGCCAAAGGTAGTTGCCGCTGGTTCTACACCCGATAACTCAGGCGGTGTTGGCACAGGCGCGTGGATACCTGTTGGCATTAATTCTTTGTCTGGCGATGGTGGTTGGTCACGAATAGGATCCGAATTTGGTAAATCTTTGAAAGAACATATTCAAAGTCTTCCCAGCTTGTCTGCCGTCAAATATATGACATTTGTTGAATACGCAGCCCTTTTGGCAGGAAACGACACGGTCAATCATGACGTTAAAGTTCAGCAAGTTATGGATGAAGCGCATGAATTGAAATGCTCTGTTTATTTTCCAACAGGGCGTTATGTATTTGACACAGCAGTCAATGTTTGGACATACGTTCGCGCTGTTTGGGGAGACGGTTCGGCCATTATCACCAGACGTTATGGAAGTCAGTTTAGTTCCCCTGGGGTGATAGATCCGGCGCATGATACGCGTAAATTATTCCGAATGATGGGCGGGGCGTTGGGACCGCAGTCTATTCATGGGCTTATTATTGATGGTAATGCGCGTTCATTTACAGTCCCCAAACATACTGATCCGGATCAAACTTATCCCAACCAAACTTATTATGGCGATGTTGAACCAGTCGATGTTGGCCCATATGTATTTGGACCGGAAGGGAATACTTCTGTTCCTGGCGCTTCTTACTATAACCATGATAAGAAAGAATCCGGTCTGACCGTTTTCGATATGGTGTTTAAAGATCAACCTGGTGGTGGTGTCGTTGGTAATGGCCAAAACATCCGCGTGTTTGGAAATCACTTTATGGGTTGGTATGACCATGCTGTGTATATCGCTGGAAGTAACTTTGCCTCGGAAGGAGACGGAATTTTGTGTAGTGATATTGTTGTCACTGGTAACGTATTCCGAAATCGTATTAACAATCGAGGCAATGGAGCAGTCAAAGCACGATTTGGTGTTAATCGTTATGCAGTTACAGGCAACTCCTTTGATATAGTTGACTATTGCATGGCATTTGAGATGGGTAACGGACCAGCGACTCAACCATTTGGCCAAATTGTTGTGGACGGTAACGTGTGCACTTCAGATGGTATGTTTATGCAAATCGGGAATGATATTGGGACTGAGTGGTTCTCGACCAATTGGCTCAAATCAATGACTATTACGAATAACACAGCACGGTCGTTGGATCGCATTTTCTTGTTAGGGGTTAGCGGATCTTCCAGTTATATTATGGATGGGTTTTCTGTACAAGTGGCCAATAACCGATTTTATGCGCCGTCATTTTTGTCCGTGTACACATTCATGACGAATACGGAATGGATGTTGAATAACAATATCGTGGAGATCACAGGAACTGCTATGATCACAGGAGTTGATCAATCGAACATCAACAATTCACGGATATATCTTAAAGATAATGTTTTAGGAGTTCTCCGGACTGATGTTCAAGGTTATGCTGCAGTCAGTAATTTTCAACAAGTTGAAATTTCTAATAATACATTGCGTAATTTGTATTTCCAAATAGGAAGTTATACCACAGATCTGTCTATTAAAGGAAATACTGTTAACTACACATCTGCATTATCCAGTAAAAACTTGGCGCTCATGTATTCAAGTGCTGGGAATGGTTTGATAACAGCCGATATCAGTGATAATAAGTTTTTCGGTGGAGTTGGTCGTTGCCAACTTAAATTCAGTAGCAGCGCTTCTCTGGATTGTATTAACAACAAATTCTTTACAACTTCGGCACCGTTTTTGGAATTGCATCCGGCTGGTTATACTCCACGCGTCGTTCGTATAAAGGACAATTTAATGCGTGGTACAGGCGTATTGCTGGCTCCTCTTGCTTCTGGTGTTTCTTTGTCCGGCGCTGGGAATTATATGGTAATTTCGGGCAACACGTTGATGGCTAATAACCCATCTGCGCCCGAAAATATAACTTTGTATCAGGACACAGGTGCGCAGAGTTGGGTGGCCCATTATGAAACTATCAGATGTGTTCGAAATGATTTCAAATCTGCGCTGTTGGCGATTAATGCAACAGGGACAGCACAATCTGGTTTGAGCACTACCAATAAATTCTGGTTCGGGGATAACGCGACGATCAATACCACGGTTGTTTGTACTTATCCTGCTGGCAACAAAGCCAACACCGATATCACTCAGACAGTTTCAGTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6e00ab3473ec183c948a6322524b84079106c4c8f122a9224671f3ec74b94d8f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6583
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50