Protein

View in Explore
Genbank accession
WYD67225.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MLDNRNRIIFESTLGKREFIHDPVGWDELDTTVGRSNTTHGIFTTISQNLEFVFEAREYLVDLYLLEGVQAKCKMTRQKRDSFNDNWKTIDDGDLDFSQFKWNKESCTLDFIENGFSEKFDNYKKEEFEIDRLDDIDGNILKPLAKQDLVISGRRIFLKSALYVEDGAIADFDNLSNRNNYESRVIPLNIDYKSDENIVIPTSRDFSESNQNYGDGFAGNMFYLNADRDRTIVLNGTISGRHVGATSTEFFRFSLIRYKKDSEGVYKRLEVINLVTKNTPNTSISYTFNNYVINVEEGESYALGASIFSGGRSTIVFNSSRIEITEDSAFRETSNKAIKAFDLGQRLTHIIDVNAEFKSDLLQNEFSGLLFASGATIRNVKIEDESGNESIAPLLTTSFEDFYDAINVITPIAYDVYKESGKNIVRIESIDYFFNPKPFVKVGRVADIENEIDPDWVYSAIDIGYENSGDIEGVYGLRATHTVNSYTLPIDRVDNVYEVVTEYRTDPNEIEDCRRIQFEDYPERDTKYDKDVFIIDAEILIGKWNVRRNQRDFLEVKGVFSPETTFNNRLSPANCLLRHAKVFKSGMQLDYFNNKKLRYASTTGQNNKLITTSLSGVETPEELTRDISEFSKALFTPVRVTFTGTLEEDIYAGVKRNGRTDDSPNKFKLIEYIDYSGVIQQGYIYKLDFNNEIKYELRWLQD
Physico‐chemical
properties
protein length:702 AA
molecular weight: 80743,91930 Da
isoelectric point:4,80712
aromaticity:0,11966
hydropathy:-0,51011

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WYD67225.1
1 702
Domain Start End Length (AA) Confidence
N-terminal 1 222 222 0,8887
Central domain 223 421 200 0,0920
C-terminal 422 702 280 0,2826
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-222
Central
223-421
C-terminal
422-702

Taxonomy

  Name Taxonomy ID Lineage
Phage Leeuwenhoekiella phage vB_LaeS_Arctus_1
[NCBI] 		3120034 Viruses >
Host Leeuwenhoekiella aequorea
[NCBI] 		283736 cellular organisms > Bacteria > Pseudomonadati > FCB group > Bacteroidota/Chlorobiota group > Bacteroidota

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WYD67225.1 [NCBI]
Genbank nucleotide accession
PP314354 [NCBI]
CDS location
range 26188 -> 28296
strand +
CDS
ATGCTAGACAATCGCAATAGAATCATATTTGAATCTACTCTAGGCAAAAGGGAGTTTATTCACGATCCGGTTGGATGGGATGAATTAGACACAACAGTAGGTCGAAGCAATACAACTCACGGAATATTCACAACCATAAGTCAAAACCTAGAGTTTGTATTTGAAGCCAGAGAATATCTAGTAGATCTTTATTTATTAGAAGGAGTACAGGCAAAGTGTAAAATGACCCGTCAAAAAAGAGATTCCTTTAACGACAATTGGAAAACTATTGATGATGGTGATTTAGATTTTAGCCAGTTCAAATGGAATAAAGAAAGCTGCACGCTTGATTTTATAGAGAATGGATTCAGTGAGAAATTTGACAACTATAAAAAAGAAGAGTTTGAAATTGATCGTTTAGATGATATTGATGGCAATATACTAAAGCCTTTAGCTAAACAGGATCTAGTAATAAGCGGTCGAAGAATATTTTTGAAATCTGCCTTGTATGTAGAAGATGGGGCTATTGCTGATTTTGACAATTTAAGCAATCGAAATAATTATGAGAGTAGGGTAATACCTCTAAATATTGATTATAAATCAGATGAAAATATAGTCATTCCTACTTCAAGAGACTTCTCGGAAAGCAATCAAAACTACGGTGATGGTTTTGCTGGGAATATGTTCTACTTAAATGCAGACAGAGATAGGACAATTGTATTAAACGGTACAATTTCAGGCAGACACGTTGGGGCCACAAGCACAGAGTTTTTCAGATTCTCATTGATTAGATATAAGAAGGACAGCGAAGGGGTTTACAAAAGGTTAGAAGTTATTAATCTCGTAACTAAAAACACTCCTAATACTTCTATAAGCTACACCTTTAATAATTATGTGATTAATGTTGAAGAGGGCGAAAGTTACGCATTAGGAGCAAGTATATTTTCGGGTGGTAGGTCAACTATTGTATTTAATAGTTCAAGAATAGAAATAACCGAAGATTCAGCATTTAGAGAAACCTCGAATAAGGCGATTAAAGCTTTTGATCTAGGTCAAAGACTTACACATATCATAGATGTAAACGCAGAGTTTAAAAGTGACTTATTGCAAAATGAGTTCTCCGGATTATTATTTGCTTCTGGGGCCACGATAAGAAATGTAAAGATTGAGGATGAATCAGGTAATGAAAGTATAGCACCATTACTTACAACATCTTTTGAGGACTTCTACGATGCTATTAATGTTATTACTCCAATAGCTTATGATGTGTACAAGGAGAGCGGTAAAAACATAGTTAGGATTGAAAGCATTGATTATTTCTTTAACCCTAAACCATTTGTAAAAGTTGGTAGGGTAGCAGATATAGAAAATGAAATTGATCCGGACTGGGTTTATTCTGCTATTGATATTGGTTACGAGAATTCAGGAGATATAGAAGGAGTTTACGGACTTCGGGCAACGCATACGGTTAATTCCTATACACTTCCTATTGATCGAGTAGATAATGTTTATGAAGTCGTTACAGAATATAGAACAGACCCTAACGAGATTGAGGATTGTCGAAGAATACAATTTGAAGATTACCCGGAGCGCGATACTAAATACGATAAAGACGTTTTTATAATCGATGCTGAAATACTAATCGGTAAGTGGAATGTAAGACGAAATCAAAGAGACTTTTTAGAGGTTAAAGGTGTATTTAGTCCAGAGACAACCTTTAACAATCGGTTAAGTCCTGCAAACTGCTTGCTTCGTCACGCTAAAGTATTCAAATCAGGTATGCAGTTAGATTATTTCAACAATAAGAAGTTAAGGTATGCGAGCACCACAGGACAAAATAATAAGCTAATCACCACATCATTGAGCGGTGTAGAAACGCCTGAAGAACTTACACGAGATATATCGGAATTTTCAAAAGCTTTATTTACACCGGTAAGAGTAACGTTTACCGGAACGCTTGAAGAAGATATTTACGCCGGTGTAAAACGAAATGGCAGGACTGACGATTCGCCGAATAAATTTAAGCTGATTGAATACATAGATTATTCAGGTGTTATTCAGCAGGGTTACATATACAAATTAGACTTTAATAACGAGATAAAATACGAGTTAAGATGGCTTCAAGATTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
6740ae1002026186c1b152c8314c2e312728adf0b93ed759a7e76e0788e779ce
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8464
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Viral challenges and adaptations between Central Arctic Ocean and atmosphere Rahlff,J., Westmeijer,G., Weissenbach,J., Antson,A. and Holmfeldt,K. 2024 — GenBank