Protein

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Genbank accession
YP_009055303.1 [GenBank]
Protein name
membrane protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MGAGILIDYNDGRPVMEITAGLRAPSYCTSFNQRAQSNKTLTINTPLTEGSQVVVALTRPVEVIEVFDQTLVIPDPFYVTSVTRNGNSGITLRGEDAYGAYSGLPQWAGVIMEVLPVGSRNAGLLVENSTDFTAISNVSKLMTCRYAQRVRVNGSMALPVSGVPFARWDDGNVSVGFDGGSIIVRNASYGGIDDVAASVDMDLVIFNNTPPSPGTGITMTNNQGQVTFSTVNKPFVLNSVINISTGGQNIGNSLVQLSYTGALIENNSGYNHVRMSGIRMAGNVVSAARNRVIGNYSRQQFQMPNRNVTVPTPLLVIPNMY
Physico‐chemical
properties
protein length:321 AA
molecular weight: 34337,48720 Da
isoelectric point:6,58959
aromaticity:0,07165
hydropathy:-0,00062

Domains

Domains [InterPro]
IPR045604
STR
4–297
IPR045604
YP_009055303.1
1 321
Architecture
STR
STR 4-297 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009055303.1
1 321
Domain Start End Length (AA) Confidence
N-terminal 1 84 84 0,1327
Central domain 85 283 200 0,0284
C-terminal 284 321 37 0,9948
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-84
Central
85-283
C-terminal
284-321

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage EK99P-1
[NCBI] 		1527514 Uroviricota > Caudoviricetes > Dhillonvirus >
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009055303.1 [NCBI]
Genbank nucleotide accession
NC_024783 [NCBI]
CDS location
range 20909 -> 21874
strand -
CDS
ATGGGCGCTGGAATACTTATCGACTATAACGACGGCAGGCCTGTAATGGAGATAACCGCTGGACTCCGCGCGCCGTCATACTGCACCAGCTTTAACCAGCGGGCACAGTCCAACAAGACGCTAACCATTAACACCCCGCTTACGGAGGGGTCGCAGGTCGTCGTCGCGCTCACTCGCCCGGTAGAAGTGATTGAGGTATTCGACCAGACCCTGGTAATTCCCGACCCGTTTTACGTTACGTCTGTTACCCGCAACGGGAATAGTGGTATCACCCTGCGCGGGGAGGATGCGTATGGCGCGTACTCTGGCTTACCACAATGGGCTGGCGTCATAATGGAAGTGCTGCCGGTTGGTTCACGCAACGCGGGCTTACTGGTGGAGAACTCGACGGACTTCACCGCCATATCCAACGTGTCTAAGCTAATGACCTGCCGATACGCACAGCGCGTGCGCGTCAACGGTAGTATGGCATTGCCCGTTAGCGGTGTCCCGTTCGCCCGATGGGACGATGGCAACGTATCAGTAGGCTTCGACGGCGGCAGTATTATTGTCCGCAATGCGTCCTATGGCGGTATTGACGATGTGGCGGCTTCGGTGGATATGGACCTGGTGATATTCAACAATACGCCGCCATCACCGGGGACCGGCATTACTATGACTAACAACCAGGGCCAGGTCACGTTCTCCACTGTGAATAAGCCGTTTGTCCTCAATTCCGTAATTAATATCAGCACTGGTGGTCAGAATATTGGCAACAGCCTCGTACAGCTCTCATATACCGGCGCGCTCATTGAGAACAACAGCGGATATAACCACGTGCGAATGAGCGGGATACGCATGGCTGGCAACGTGGTTAGCGCGGCACGAAATCGCGTGATCGGTAACTACTCACGGCAGCAATTCCAGATGCCTAATCGTAATGTAACCGTACCCACACCGTTACTAGTCATCCCTAACATGTATTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
d61af07bdc2dace36eccc94f8268e5963b90e6564c526db60ffe3d5d2b9e2bfc
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8424
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Virulent Bacteriophage Infecting Escherichia coli K99 Son,J.S., Paik,H.R., Park,S.H., Kim,B.K., Jun,S.Y., Yoon,S.J. and Kang,S.H. 2013-05-07 — GenBank