Protein

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Genbank accession
YP_005098358.1 [GenBank]
Protein name
virion structural protein
RBP type
TF
Evidence RBPdetect
Probability 0,89
Protein sequence
MSWTITGQEAGSLGLLDQYGGAASAYSLRNLSLYHTDPVVRVRRDNDNAEQDFTAAEVSDGTLAAWVGAGNDGFVRTWYDQSGNGNNAQQAIAARQPKIVDNGALVAEGGKTAIDFDGSDDGLDTATTVANAGDTTVFVISKADESEDAFRFVAGQWLGGSTRKWNLIYSSSFFTQDSLYFGTNDGTNNNTPSITGNNDSLVQKLSTGIAKSTSTELFVNQVSAGVQSCSALESTATKLFIGYQFNPPSAYGSFMDGKIQEVIVYSSDQSANRIAIEANINAHYNIF
Physico‐chemical
properties
protein length:287 AA
molecular weight: 30580,88900 Da
isoelectric point:4,35037
aromaticity:0,10105
hydropathy:-0,29547

Domains

Domains [InterPro]
DC_0797
STR
1–286
DC_0797
G3DSA:2.60.120.200
STR
17–160
G3DSA:2.60.120.200
IPR013320
STR
76–276
IPR013320
YP_005098358.1
1 287
Architecture
STR
STR 1-286 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-CBS4
[NCBI] 		756275 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Synechococcus sp. CB0101
[NCBI] 		232348 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_005098358.1 [NCBI]
Genbank nucleotide accession
NC_016766 [NCBI]
CDS location
range 47413 -> 48276
strand +
CDS
ATGAGCTGGACTATTACAGGACAGGAAGCAGGTTCTTTGGGACTGCTGGATCAATACGGTGGCGCTGCATCTGCCTATAGCCTTCGCAACCTGAGCCTCTACCACACCGATCCTGTCGTCCGCGTCCGCCGCGATAACGACAACGCCGAGCAGGACTTTACCGCCGCCGAAGTTAGCGACGGAACGCTGGCTGCGTGGGTCGGTGCTGGAAATGACGGCTTTGTGCGGACTTGGTACGACCAGAGTGGGAATGGAAATAACGCGCAGCAGGCGATTGCCGCGCGTCAGCCGAAGATTGTGGACAACGGGGCGCTCGTCGCCGAGGGTGGGAAGACGGCAATTGATTTTGATGGCAGTGATGATGGCTTAGATACAGCCACAACCGTTGCAAACGCTGGAGATACTACAGTGTTTGTAATATCAAAAGCAGATGAATCGGAAGATGCATTTAGATTCGTGGCTGGTCAATGGTTGGGCGGCAGCACACGGAAATGGAACCTTATTTATTCTTCATCATTTTTTACGCAAGACAGTTTGTATTTCGGAACAAATGATGGAACGAATAATAACACCCCATCAATTACAGGTAACAATGATAGCTTGGTGCAAAAACTATCAACTGGCATAGCTAAAAGCACATCAACGGAACTTTTTGTAAATCAAGTATCTGCCGGTGTGCAATCTTGTAGTGCTTTAGAATCTACGGCCACAAAACTATTTATTGGTTATCAGTTTAACCCACCGAGCGCATATGGTTCATTTATGGATGGTAAAATCCAAGAAGTCATTGTCTACTCCTCCGACCAATCCGCCAATCGCATTGCCATCGAAGCCAACATCAACGCCCACTACAACATCTTCTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
1ef1ecbcc0436878dbb725ebaa7b368fbc21a740c644faf5cf43940c31ffc334
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8847
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50