Protein

View in Explore
Genbank accession
AGH57291.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,85
Protein sequence
MSQLNVGTVNATTITTGATGVQFDDGSSQATAAIGSMTLNDLNDLSAGTPGVNQQLTWNGSAWAPQTTQQNIVKVWANGGTTVNQTCSSRRGTTTSDMMFINGTEIDCGIPENASNWHRIYWGSVVDDSGGASNPDGFGFGLFRNVNNAGWTRILDTGSHANYVNGLGDWYEFGTFFAYVPVVNSTQSHKYRIYMKRHNDVNYRVNCSIGADQKRNGWNNSVIEVWEISTTNFTTYDLTRY
Physico‐chemical
properties
protein length:241 AA
molecular weight: 26389,54570 Da
isoelectric point:5,22529
aromaticity:0,11203
hydropathy:-0,45394

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGH57291.1
1 241
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,2870
Central domain 11 203 194 0,0082
C-terminal 204 241 37 0,9992
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-203
C-terminal
204-241

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage S-SSM2
[NCBI] 		536464 Uroviricota > Caudoviricetes > Pantevenvirales > Ahtivirus > Ahtivirus sagseatwo
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGH57291.1 [NCBI]
Genbank nucleotide accession
JF974292.1 [NCBI]
CDS location
range 21969 -> 22694
strand -
CDS
ATGTCCCAACTAAATGTAGGAACAGTAAACGCTACTACAATCACAACAGGTGCAACAGGCGTCCAATTCGATGATGGATCGTCACAAGCAACTGCTGCGATTGGTAGCATGACACTCAACGATTTGAATGACTTGAGTGCAGGAACTCCAGGAGTCAATCAACAACTAACGTGGAATGGTTCTGCATGGGCACCACAAACTACTCAGCAGAACATTGTCAAGGTCTGGGCAAATGGTGGCACTACAGTGAACCAAACCTGCTCTAGTCGTCGTGGTACTACCACAAGTGACATGATGTTCATCAATGGCACTGAGATCGACTGCGGTATTCCTGAAAATGCTAGTAACTGGCATAGAATCTATTGGGGCAGTGTTGTGGATGACTCTGGTGGTGCATCTAACCCTGACGGATTTGGTTTCGGTCTATTCAGAAACGTCAATAACGCTGGTTGGACTAGAATCTTAGACACAGGATCTCATGCAAACTATGTAAACGGTCTTGGTGATTGGTATGAATTTGGTACATTCTTTGCTTATGTTCCTGTTGTAAACAGTACGCAGAGTCATAAGTATAGAATCTATATGAAGCGTCACAATGATGTGAACTATCGTGTGAACTGTTCTATTGGTGCTGACCAGAAACGCAATGGTTGGAACAATTCTGTTATCGAAGTGTGGGAAATTAGCACCACAAACTTTACGACGTATGATCTAACGAGGTATTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
f622e3986569c645a54b46a4598c8eb46d83c84661ec6d0b4c50b32bb75ba148
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7301
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage S-SSM2 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank