Protein

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Genbank accession
QXV73668.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,61
Protein sequence
MKADGSLKSLLQGISQQPVRDRLPGQGTSQINMSADPVKGLSRRPGEDLVNQLGPAGVAKGWGTFQTQDGKQWIVKITASGPEVYDFNGTPAPVTVPGGDSYWSTDGQWSVATMKGKTYLANSGIVVEQDTATSSYPNHSTYSMAVFQILGGNYGKTYTIRINNSVAGTYTTPDGSASSHALNIDTVYIASQLAASLVTNGYNTGGWTTSRVEDIITVRHSTLGTITSAIISDGAGNINAKAMLDSVGDVADLPRFCMHNFAVRVAQEVDPEEDLWLKFVMDNPAGGLGTSGAWYECLAPGLSIGLKDISMPRCLTYDADTGEFTAAVVEWADRAVGTNTTNPMPSFVGYPITDISMFQSRLIVLAGPNLIASRSKRYEDFFVGSASTLVDSDPLDLTSQAAFASTLKYAIPHNKDLVIFSTKGQFILFGRSAITPSNAALVLTTSFEADLMARPQACGRNVFFATKYGRFAGIREFYTEGGTDINDTRSITQHVNKYMLGSTVHMAATSNYDHLLVHTDDDRKNVYVYQFIWNDQEKIQSAWSKWQFSHEIVYSFFDDELIYMIMQVGTTYYLLRLSLDTVPEGALEYHVHLDARFDVTGVNTAFVLPFDWLADVPLTIVQGEDCPHPGLPVRISSIIYDPMELGYVVTMREDMMGGDIIVGVNMLSEYQPTMPRAKDSDGVVISNARLVINQFLVSTAGTGDINGQKMTAWGDGPEVIFQGYLTNSPGSVTGRPALDDHVFKMPFKAKCDEAEVRFYTDSHWPMTILDIEWEGTINKRGKRIPVGN
Physico‐chemical
properties
protein length:788 AA
molecular weight: 86149,10870 Da
isoelectric point:4,98134
aromaticity:0,09898
hydropathy:-0,14340

Domains

Domains [InterPro]
IPR058003
TTP
5–784
IPR058003
QXV73668.1
1 788
Architecture
TTP
TTP 5-784 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QXV73668.1
1 788
Domain Start End Length (AA) Confidence
N-terminal 1 129 129 0,9764
Central domain 130 328 200 0,2724
C-terminal 329 788 459 0,2758
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-129
Central
130-328
C-terminal
329-788

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_I40
[NCBI] 		2836138 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QXV73668.1 [NCBI]
Genbank nucleotide accession
MW980062 [NCBI]
CDS location
range 26216 -> 28582
strand +
CDS
ATGAAGGCAGACGGTAGCCTTAAATCACTACTGCAAGGCATTAGCCAGCAGCCTGTTAGAGATAGGTTGCCGGGCCAAGGTACCTCGCAGATTAACATGAGTGCAGACCCTGTTAAGGGCCTGTCTCGCAGACCCGGCGAAGACCTTGTAAATCAACTTGGTCCCGCTGGTGTAGCTAAGGGCTGGGGAACCTTCCAGACACAAGATGGTAAGCAGTGGATTGTAAAGATTACTGCATCCGGCCCGGAAGTATATGATTTCAATGGTACGCCCGCCCCGGTTACTGTACCGGGTGGAGATAGTTATTGGTCTACTGATGGCCAATGGTCTGTCGCCACTATGAAGGGCAAGACGTATTTGGCTAACTCTGGTATCGTAGTGGAACAGGACACAGCAACTAGCTCGTACCCTAATCACTCTACGTATAGCATGGCAGTATTCCAGATACTAGGCGGTAACTACGGTAAGACGTACACAATACGCATTAATAACTCAGTGGCTGGAACGTACACTACTCCGGATGGTTCCGCAAGTTCGCATGCGCTTAACATCGACACGGTGTATATTGCATCGCAGCTTGCAGCTAGTCTAGTTACTAACGGGTATAATACCGGCGGTTGGACTACATCCAGAGTGGAAGATATTATTACTGTACGGCACAGCACGCTAGGCACGATCACCTCTGCTATTATATCGGACGGTGCTGGTAACATCAATGCCAAGGCTATGCTGGATAGTGTAGGTGACGTAGCTGACTTGCCTCGTTTCTGCATGCATAACTTCGCAGTACGTGTAGCGCAAGAAGTAGACCCTGAAGAAGACCTGTGGCTGAAGTTCGTTATGGACAACCCAGCAGGTGGTCTCGGTACGTCTGGTGCATGGTACGAGTGTCTAGCTCCCGGGCTGTCTATAGGCCTGAAGGATATTAGTATGCCTAGGTGCCTGACATATGATGCAGACACCGGGGAATTTACAGCAGCAGTTGTAGAATGGGCTGACCGCGCGGTTGGTACAAATACTACTAATCCTATGCCTAGCTTTGTAGGATACCCTATTACGGATATCAGCATGTTCCAGTCTAGGCTTATTGTCTTGGCTGGGCCAAACCTTATTGCATCTAGGAGTAAGCGATATGAAGACTTCTTCGTGGGGTCAGCTAGTACCCTTGTGGATAGTGATCCTCTGGATCTTACCAGTCAAGCTGCCTTTGCTAGCACTCTCAAGTATGCTATCCCTCATAACAAAGACTTGGTTATATTTAGTACGAAGGGCCAGTTTATTCTGTTCGGTAGGTCGGCGATTACTCCGTCGAATGCAGCACTAGTATTGACGACTAGCTTCGAAGCAGACCTTATGGCTAGACCACAGGCTTGTGGCCGTAACGTATTCTTTGCTACGAAGTATGGTCGATTTGCAGGTATCCGCGAGTTCTATACCGAAGGTGGTACAGATATTAACGATACTCGCTCGATTACTCAGCACGTTAACAAGTATATGCTGGGCAGCACTGTACATATGGCAGCTACGTCTAACTATGACCACCTTCTAGTGCACACGGATGACGATCGTAAGAATGTGTATGTGTACCAGTTCATCTGGAACGATCAGGAGAAGATTCAGTCTGCATGGTCAAAGTGGCAGTTTAGCCATGAGATCGTGTATTCGTTCTTCGATGATGAATTGATCTACATGATCATGCAAGTAGGTACTACGTATTACCTGCTGAGGTTGTCTCTCGATACTGTGCCGGAAGGTGCTCTTGAGTATCACGTGCATCTTGACGCTCGCTTCGATGTTACAGGCGTGAACACGGCCTTTGTGCTGCCCTTCGACTGGCTTGCTGACGTGCCGCTTACTATTGTACAGGGTGAGGATTGCCCGCATCCGGGTCTGCCTGTGCGCATTAGCAGCATAATCTATGATCCAATGGAGCTTGGGTACGTCGTTACCATGCGCGAGGATATGATGGGCGGTGATATTATTGTTGGCGTTAATATGCTAAGCGAGTATCAGCCTACCATGCCACGTGCTAAAGATAGCGACGGTGTTGTGATTAGTAATGCACGGCTGGTTATCAACCAGTTCCTTGTATCTACTGCAGGCACCGGAGACATTAACGGGCAGAAAATGACGGCGTGGGGAGACGGTCCTGAGGTAATCTTCCAAGGTTATCTAACCAATAGTCCCGGCTCGGTAACGGGTAGGCCAGCACTAGATGACCATGTGTTTAAGATGCCATTCAAAGCTAAGTGCGATGAGGCAGAAGTACGTTTCTATACAGATAGCCATTGGCCTATGACCATTCTGGATATCGAGTGGGAAGGAACTATTAACAAGCGCGGTAAGCGCATCCCTGTAGGAAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0e1dbb15c63f8ffac3407aa98d0a07ef541329e21754838634c6f3aeffad8383
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3004
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Hidden Diversity of Double-Stranded DNA Phages in the Symbiotic Bacterium Rhizobium Santamaria,R.I., Bustos,P., Cauwenberghe,J.V. and Gonzalez,V. 2011 — GenBank