Protein

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Genbank accession
USS70700.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence RBPdetect
Probability 0,55
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSGTRAPKTIVVYDITGQTDYTIPFEYLARKFVVVTLIGQDRKVLTLNTDYRFTTKTTIGLSDPNPVGYNKIEIRRFTSATDRLVDFHDGSILRAYDLNLSQIQTLHVAEEARDLAGDSIAVDDNGDLDARGRKIVNLADAEDDTDAVNYGMLKKFDNSTFNNAQKAEASANAAKSSENKAKDSELRSIEAEAKCLASAGIAITAAADANRSKVAAEDAEQVVVPLVPIVEKASKDAAKAAADAAQAVQDVKDLGAVPVGTIATFIKTPPAGYLKCDGSTFSQTEYPELYAYLETNVLPNFNDRYLKQPSDEVNINQGFNAQMPDHWHDVTEHTHTRGNMEITGEFRNVNNSGTWHEMTYTSGAFHSGAPEPNCAFVQSLTPSYTGLTMAYFNASRTWTGNTSASLIKTEGINRSSLSIAIGQALEVKHHTVIFAIKAAGKVSDEGLMEVTQIKADVSDLTTRVETLEEWPQSGSNERGTWVKHQDGRMECHYQAILGFQDYTEVSGALYKGPNHFWTFPEEFIATPTVHIMGNNASNAWLFCSSAFPSTTAVTYSVFSVIRGSNIQTTIGLAAFGRWK
Physico‐chemical
properties
protein length:579 AA
molecular weight: 63259,73550 Da
isoelectric point:5,23114
aromaticity:0,08808
hydropathy:-0,32677

Domains

Domains [InterPro]
DC_0264
STR
2–576
DC_0264
IPR005604
ATT
7–130
IPR005604 SSF88874
IPR037053
ATT
255–307
IPR037053
IPR011083
ATT
260–300
IPR011083
USS70700.1
1 579
Architecture
ATT
STR
ATT
STR
ATT 2-130 | STR 131-254 | ATT 255-307 | STR 308-576 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
USS70700.1
1 579
Domain Start End Length (AA) Confidence
N-terminal 1 466 466 0,6392
Central domain 467 568 103 0,0011
C-terminal 569 579 10 0,9982
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-466
Central
467-568
C-terminal
569-579

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage ICP3
[NCBI] 		979535 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Chatterjeevirus
Host Vibrio cholerae
[NCBI] 		666 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
USS70700.1 [NCBI]
Genbank nucleotide accession
ON464736 [NCBI]
CDS location
range 33240 -> 34979
strand +
CDS
ATGTCAGGCACTCGTGCTCCTAAGACTATTGTGGTTTATGATATCACAGGTCAAACAGACTATACGATTCCATTCGAGTACCTTGCTCGTAAGTTCGTAGTGGTCACTCTTATTGGTCAAGACCGTAAGGTTCTGACTTTAAATACCGACTATCGGTTTACTACAAAGACAACTATCGGTTTATCAGACCCAAATCCAGTAGGTTACAATAAGATTGAGATTCGTCGATTCACTTCAGCTACTGACCGTCTGGTAGATTTCCATGATGGTTCTATTCTTCGTGCTTACGATTTGAACCTCTCACAGATTCAAACTCTTCATGTTGCTGAAGAAGCTCGTGACCTTGCAGGTGACTCTATTGCTGTTGATGATAACGGAGACTTAGATGCTCGTGGTCGTAAGATTGTTAACCTTGCAGATGCAGAGGATGATACCGATGCAGTGAACTATGGGATGTTGAAGAAGTTCGATAATTCTACTTTCAACAATGCTCAAAAAGCTGAAGCTTCTGCTAATGCTGCTAAATCTTCTGAGAACAAAGCTAAAGACTCAGAGTTACGCTCTATCGAAGCTGAGGCAAAGTGTCTTGCATCTGCTGGTATAGCTATAACTGCTGCTGCTGATGCTAATCGTTCTAAAGTGGCTGCTGAAGATGCTGAACAAGTAGTCGTGCCGTTGGTTCCAATCGTAGAGAAAGCCTCTAAGGACGCTGCTAAAGCTGCTGCTGATGCTGCTCAAGCGGTACAGGATGTTAAAGACCTTGGTGCTGTGCCTGTTGGTACAATCGCTACGTTCATTAAAACGCCTCCTGCTGGTTACTTGAAGTGTGATGGTTCTACCTTCTCACAAACTGAATATCCTGAACTTTATGCTTACTTAGAGACTAACGTTCTACCTAACTTTAATGACCGCTATTTGAAACAGCCTTCTGATGAAGTAAACATTAACCAAGGGTTTAACGCTCAGATGCCTGACCACTGGCATGATGTTACAGAGCATACTCATACTCGTGGTAACATGGAGATTACTGGTGAATTTCGTAATGTGAATAACTCAGGTACTTGGCATGAAATGACATATACCAGTGGTGCTTTCCATTCTGGTGCTCCTGAGCCTAACTGTGCTTTCGTACAAAGTCTCACACCTTCATATACAGGTTTAACAATGGCTTACTTCAATGCTTCTCGTACTTGGACAGGTAATACCTCTGCTTCTTTGATTAAGACAGAAGGAATCAATCGGTCTTCCCTAAGTATCGCTATTGGACAGGCTCTGGAAGTTAAACACCATACGGTTATCTTTGCGATTAAAGCCGCTGGTAAGGTTTCTGATGAAGGTCTGATGGAAGTCACTCAGATTAAAGCTGATGTGTCGGATTTAACTACTCGTGTGGAAACTCTTGAAGAATGGCCTCAAAGTGGTTCTAATGAAAGAGGTACTTGGGTAAAACATCAAGATGGTCGTATGGAATGTCATTATCAAGCTATTCTTGGTTTTCAAGATTATACAGAGGTAAGTGGAGCTTTATATAAAGGTCCTAACCACTTTTGGACATTTCCTGAAGAGTTCATTGCTACACCTACGGTGCATATCATGGGTAACAACGCATCGAATGCTTGGTTATTCTGTTCTTCTGCCTTTCCATCAACTACAGCAGTAACTTATAGTGTTTTCTCAGTGATTAGAGGCTCTAATATTCAAACCACAATCGGATTAGCTGCATTTGGACGTTGGAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2b22ea44fbbdfedc45b6fb949f46c93f6bf81d2eb43dda3307f5630c4bf52a15
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7149
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Vibrio cholerae Seventh Pandemic islands act in tandem to defend against a circulating phage O'Hara,B.J., Alam,M. and Ng,W.-L. — — GenBank