Protein

View in Explore

Genbank accession

XYM58908.1 [GenBank]

Protein name

tail fiber protein

RBP type

Evidence Phold

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,86

Protein sequence

MAEFRLGRVKFNWTGNWAPSKSYLIDDIAKFGGNTYVAVANHTSTASTANFYTDLGNWNLHIEGLEQRGEWTTDTYYRVNDLVTYANVVYRVTEAHTSVGTFIDETKVVQYVAGFNAEGDWNLEEDYQKGDVVNYNGSSYVAITTSVAGFVPPQFIGLGTGSKWNILADGLAGAAITYTEGTYYRGDMILYGGNTYRHKVGVTTNVSPIQVGLGSVGDAARDGSSTWDLLVKGFSFVGNFSTTFAYHPGHVVRYGSNSYVSVGNSFVNIDPVVGVGTYWETLAAGDSAAALNTKGDLLTYNGGPARIGIGSTGYALAVQSNGLPGYEIVGNQTRIYYVDSEDGIDTNNGLAPNLAFRTIKQACRSARPDNAITDFDYTAATGVATITSPGHGLANTGTFIQLAEIEFECLSGGNVFNILGMTYNKSVGLATITAIGLGAAPEIGIGATVRLRNLGVSFTGNANFDHQFSSALDDAVITGGDYIHNFVAATAGAVNVVTGSLAGSQLTPTNAVYSATSGELEITVGSHGLSISDTISFDANSMTFTCQMDGGTANKTYPRTTDPAYGVNLPISAITANTFTVNVGPSPIVNFNVSDATYNQNTGDITMTIGVHQLDVGTSIKLLTEGLIFKCSMDGYLTDHAYPRATAGDGSPDPAYNTALSITAATTTTITVNVGTASSSQTINGKFPAVHTQASTFQFPVQAVPDANSIVVNVGASQTDYLYVSGGTAFVGVTTTVYPDKVSKSYFEVLQVIDSDTIRTNVGISTINHTYVRGGHLTDLTPAILKLSASQFYEQLPIKVPPFTSIVGNSLRGTQVLPASGISDDSVTPNNRSQMFQMSDATTLQALSMKGMEGFYYDPQAPYVLDNANLRTGIGTTACGVVCALNPDSPINNKSPYVKDCTVFSDNAYDYGRFGGGAVGVFCDGGVHDEGAKSMVFDSFTQVSSDGAGFILDKSAIAEIVSCFTYYCQWGYYSGGGSRIRSVGGNNSYGDYGVIASGFSTEETPRTARVFGSLMAVNGATKAGTLAIGATMFGATSGARGWFLNDQTAADKIYFKYHPGYGSVGLGTTGFVDGEVVWFGDGGENGAGIGSITMSGVTSSISGQKGTILEVDNISSTLLVGDALGFSTTSYGDDDLFYIINTITNVSAATTYTYYTTTGIATITYPERATLTISPEKSNGTWDTREVTGAGSTVSIRTLFSQCRLTGHDFLSVGTGSKAETNYPDVDQTRIIQGNETNYFGPGKVFFVSTDQGGNFRVGQFFSVDQLTGRATLDASAFNLSGLTELRLGAIGGQVGEAINEFSSDEFMSGLSNNACPTEAAVAGFLRHGSMGTKAMTPPVGTTAQRPGGVDEEFNTGALRFNTDLGALEYYNGTSWIQPGIQSYSTVTTSGSVVSGTTYFVNTNGGQVTLDLPASPNLGDTIRFYDVAKTFDSNNLIVGRNGKLIQGDSADMTVALEGASFELTFSGDSYGWRLFSV

Physico‐chemical properties

protein length:	1477 AA
molecular weight:	155680,38600 Da
isoelectric point:	4,64473
aromaticity:	0,10562
hydropathy:	-0,05572

Domains

Domains [InterPro]

DC_0876
STR
4–67

DC_0876 G3DSA:2.10.10.20 G3DSA:2.10.10.90 DC_0419 DC_0763

G3DSA:2.10.10.20
ATT
15–62

G3DSA:2.10.10.20 IPR036573 DC_1819

DC_2181
ATT
99–187

DC_2181

XYM58908.1

1 1477

Architecture

STR

ATT

STR

STR 4-14 | ATT 15-67 | ATT 69-187 | STR 188-369 | STR 422-592 | STR 697-1441 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_0876	STR	DC_0876	4	67	Novel HMM	DC_0876	Central	Low	Positional only	94 proteins / 94 hits
G3DSA:2.10.10.20	ATT	G3DSA:2.10.10.20	15	62	Merged direct domain	G3DSA:2.10.10.20	N-terminal	Low	Positional only	19 proteins / 19 hits
G3DSA:2.10.10.20	ATT	G3DSA:2.10.10.20	69	110	Merged direct domain	G3DSA:2.10.10.20	N-terminal	Low	Positional only	19 proteins / 19 hits
IPR036573	STR	IPR036573	70	100	Merged direct domain	Carbohydrate-binding module superfamily 5/12	Central	Low	Positional only	2 proteins / 2 hits
DC_2181	ATT	DC_2181	99	187	Novel HMM	DC_2181	N-terminal	Low	Positional only	19 proteins / 19 hits
G3DSA:2.10.10.90	STR	G3DSA:2.10.10.90	119	213	Merged direct domain	G3DSA:2.10.10.90	Central	Low	Positional only	29 proteins / 29 hits
DC_1819	STR	DC_1819	204	369	Novel HMM	DC_1819	Central	Low	Positional only	62 proteins / 62 hits
DC_0419	STR	DC_0419	422	592	Novel HMM	DC_0419	Central	Low	Positional only	24 proteins / 24 hits
DC_0763	STR	DC_0763	697	1441	Novel HMM	DC_0763	Central	Low	Positional only	71 proteins / 71 hits

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

XYM58908.1

1 1477

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	455	455	0,9189
Central domain	456	654	200	0,7382
C-terminal	655	1477	822	0,1317

Note: Constraints were applied during segmentation.
Fixed 16 C-terminal predictions appearing before Central domain

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-455

Central
456-654

C-terminal
655-1477

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Synechococcus phage Sf-FS3 [NCBI]	3413219	No lineage information
Host	No host information

Coding sequence (CDS)

Genbank protein accession

XYM58908.1 [NCBI]

Genbank nucleotide accession

PV340856.1 [NCBI]

CDS location

range 90059 -> 94492
strand +

CDS

ATGGCTGAGTTTAGACTTGGAAGAGTAAAATTCAACTGGACGGGCAACTGGGCACCTTCCAAATCCTACCTGATTGACGACATCGCCAAGTTTGGTGGCAATACTTATGTAGCGGTCGCTAACCACACTTCCACGGCAAGCACTGCTAACTTCTATACCGACCTTGGAAATTGGAATCTACATATTGAGGGTCTGGAGCAAAGAGGCGAATGGACTACTGATACTTATTACAGAGTCAACGATCTCGTCACTTATGCTAACGTAGTATATCGTGTTACTGAGGCACACACTTCTGTTGGTACATTTATCGATGAAACGAAGGTTGTTCAGTATGTCGCAGGATTTAATGCGGAAGGAGATTGGAACTTAGAAGAAGATTACCAAAAAGGAGACGTTGTTAACTACAACGGATCGTCCTATGTTGCAATTACTACTTCCGTAGCAGGATTTGTTCCACCACAATTCATCGGTTTAGGAACAGGTAGCAAGTGGAATATTCTTGCTGATGGCCTTGCTGGTGCGGCAATCACATATACCGAGGGTACATACTATAGAGGCGATATGATCCTCTATGGTGGTAATACATATCGCCACAAGGTTGGTGTTACTACTAACGTTTCTCCAATTCAAGTTGGTTTGGGAAGTGTTGGTGATGCTGCTAGAGATGGCTCATCAACTTGGGATCTTTTGGTCAAAGGATTCAGTTTCGTTGGTAATTTCTCTACAACATTCGCATATCACCCAGGTCATGTTGTTAGATATGGATCTAACTCCTATGTCTCGGTTGGCAATTCCTTCGTAAATATTGACCCAGTTGTTGGTGTAGGCACCTATTGGGAGACACTGGCTGCTGGTGACTCCGCTGCTGCTCTGAACACTAAGGGTGATCTTCTTACCTATAACGGTGGTCCGGCTAGAATCGGTATTGGTTCTACTGGTTATGCTCTTGCAGTTCAGTCTAATGGACTACCTGGATACGAAATTGTAGGTAACCAGACTAGAATTTACTATGTTGACTCCGAGGATGGAATTGATACAAACAACGGTCTTGCACCTAACCTAGCATTTAGAACAATTAAACAGGCTTGTCGTTCTGCACGTCCTGATAACGCTATTACTGATTTCGATTATACAGCTGCCACTGGTGTTGCGACAATCACATCTCCTGGTCACGGATTGGCTAACACTGGTACGTTTATCCAGTTGGCTGAGATTGAGTTTGAGTGTCTGTCTGGTGGTAATGTCTTCAACATCCTGGGCATGACCTACAACAAGTCTGTTGGTCTTGCAACTATCACGGCTATTGGTCTTGGTGCTGCTCCAGAAATCGGAATCGGTGCTACTGTAAGACTAAGAAACCTTGGTGTTTCGTTCACTGGTAACGCAAACTTCGATCACCAGTTCTCCAGTGCATTGGATGATGCAGTTATCACTGGTGGTGATTATATCCACAACTTCGTTGCTGCTACTGCAGGTGCAGTCAACGTTGTGACTGGATCCCTTGCAGGTTCTCAGTTAACTCCAACAAACGCTGTTTACTCCGCAACTAGTGGTGAATTGGAGATCACAGTTGGTTCTCACGGCCTGTCTATTAGTGACACCATCAGCTTCGATGCCAATTCCATGACATTCACTTGTCAGATGGACGGTGGTACTGCTAATAAAACATATCCAAGAACAACTGACCCCGCATACGGCGTTAATCTTCCAATTAGTGCAATTACTGCGAATACCTTCACAGTTAACGTTGGACCTTCTCCAATTGTAAACTTCAACGTTAGTGATGCAACATATAACCAGAACACTGGTGACATCACAATGACCATCGGTGTTCACCAACTTGATGTTGGCACATCGATCAAACTTCTCACTGAAGGTCTGATCTTTAAGTGTTCCATGGATGGTTATCTAACCGACCACGCATATCCAAGAGCAACTGCTGGTGATGGTTCTCCTGACCCTGCATACAACACTGCTCTGTCAATTACTGCTGCAACAACTACCACCATCACAGTTAATGTTGGTACTGCAAGTTCTTCTCAGACAATTAACGGTAAGTTCCCTGCAGTTCACACTCAGGCATCTACCTTCCAGTTCCCAGTACAGGCTGTTCCTGATGCGAACTCTATCGTAGTTAACGTTGGTGCTTCTCAGACTGATTACCTCTACGTTTCTGGTGGTACTGCATTCGTTGGTGTTACTACAACTGTTTATCCTGATAAGGTTTCCAAGTCTTACTTTGAGGTTCTTCAGGTTATTGACTCTGACACCATCAGAACTAACGTTGGTATTTCTACTATCAACCACACATATGTAAGAGGTGGTCATCTAACTGACTTGACTCCTGCTATTCTGAAACTATCTGCTTCTCAGTTCTATGAGCAACTGCCAATCAAGGTTCCTCCTTTCACCTCGATTGTTGGTAACTCTCTAAGAGGTACTCAAGTTCTACCTGCTTCTGGTATTTCTGACGACAGTGTTACTCCTAACAACAGATCTCAGATGTTCCAAATGTCTGATGCAACTACGCTTCAGGCGCTTTCCATGAAAGGAATGGAAGGATTCTATTATGATCCACAAGCACCCTATGTACTCGATAATGCCAACCTAAGAACTGGTATTGGTACTACCGCTTGTGGTGTTGTTTGTGCTCTAAACCCAGATTCTCCAATCAATAACAAGTCTCCTTACGTCAAGGATTGTACCGTATTCTCGGACAATGCTTATGACTATGGTCGCTTCGGTGGTGGTGCAGTCGGCGTCTTCTGTGACGGTGGCGTCCATGACGAAGGTGCAAAATCGATGGTCTTTGACTCCTTCACCCAGGTATCTTCTGATGGTGCTGGATTCATCCTCGACAAGAGTGCAATTGCTGAGATTGTCTCCTGTTTCACCTACTACTGTCAGTGGGGTTACTACTCTGGTGGTGGATCTAGAATCCGTTCTGTTGGTGGTAACAACTCCTATGGTGACTATGGTGTTATTGCATCTGGTTTCTCCACTGAGGAGACCCCAAGAACCGCAAGAGTCTTTGGTTCCCTGATGGCCGTTAATGGCGCTACTAAGGCAGGTACACTGGCAATCGGTGCTACCATGTTCGGTGCAACATCTGGTGCTCGTGGATGGTTCCTGAATGACCAAACTGCTGCAGATAAGATCTACTTCAAGTATCATCCTGGTTACGGTTCGGTTGGTCTTGGAACCACTGGATTCGTAGATGGTGAAGTTGTCTGGTTCGGTGATGGTGGTGAAAATGGTGCTGGTATTGGTTCCATCACGATGTCTGGTGTTACATCTTCTATCAGTGGACAAAAGGGTACAATCCTTGAAGTTGATAATATCTCTTCAACTCTATTGGTTGGTGACGCACTTGGATTCTCCACAACTTCTTACGGTGATGATGATCTCTTCTATATCATCAATACCATTACAAATGTCTCTGCCGCGACTACTTACACATATTACACGACGACTGGCATCGCAACCATAACATATCCAGAACGTGCTACATTGACCATTTCCCCAGAGAAATCTAATGGAACATGGGATACCAGAGAAGTTACTGGTGCAGGTTCTACTGTTAGTATTAGAACTCTCTTCTCACAGTGTCGCCTAACAGGTCATGACTTCCTGAGTGTTGGTACTGGCAGTAAGGCAGAAACCAACTATCCTGATGTTGATCAAACTAGAATTATTCAGGGTAATGAGACTAATTACTTCGGTCCTGGTAAAGTCTTCTTTGTCTCTACTGACCAAGGTGGTAACTTCAGAGTTGGTCAATTCTTCTCCGTTGACCAGTTGACTGGTCGCGCCACCCTGGACGCCTCCGCGTTCAACCTGTCTGGTCTGACTGAACTGAGACTGGGTGCAATTGGTGGTCAGGTCGGTGAGGCAATTAACGAATTCTCCTCTGACGAATTCATGTCTGGTCTGTCCAATAATGCATGTCCTACTGAGGCTGCAGTTGCTGGATTCCTCCGCCACGGTTCGATGGGAACCAAGGCCATGACTCCTCCAGTTGGTACTACCGCTCAAAGACCTGGAGGCGTTGATGAAGAGTTCAACACTGGTGCTCTAAGATTTAACACCGATCTCGGTGCTCTTGAGTACTACAACGGAACCAGTTGGATACAACCTGGAATTCAATCTTATTCTACCGTGACTACTTCTGGATCAGTTGTATCTGGCACCACTTACTTTGTCAATACCAATGGCGGTCAAGTCACTCTAGATCTTCCCGCATCTCCTAATCTTGGAGATACCATTAGATTCTATGACGTTGCGAAGACATTCGATTCTAACAACTTAATTGTTGGACGTAATGGAAAACTGATTCAGGGTGACTCTGCTGATATGACTGTTGCTCTTGAGGGTGCGTCATTTGAACTCACCTTCTCTGGTGACTCCTATGGTTGGAGACTGTTCTCCGTCTGA

Genome Context

Tertiary structure

PDB ID

2efd9382ef169432ebcd82e7c818771884fc83dc647330407ba242741f9dec2b

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,8188

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence