Protein

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Genbank accession
YP_010844654.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,88
Protein sequence
MAKGWSFGGLVAALKSAAFLNAGTARGEVITVGQKNAQIPTTAFVRNFNFNTYTFVNGEVLYVEMSSAVNVPPELQKWDLSSVSGAYVIVTVLGISDNSNATILVSHGQAARPPIMYYSQGPSGSRAYTAHAVMTCKSAGTTNINLLTGASDVGIYYQESDSVAGSAGGYPAAMAGTLEVLPTAYNVQQRYTSIYGNVWVRSRVLDTSQNWADWRELARVNQRDRVTEVGAIELYNGAPYIDFHHANSGLDYTARIIADSPDQLTLRGTGGAGFKLNLVGQYRGTTWSRGWGQETDGQVPYGVYGCEVAPDSWVPIVTLNTNTTGYGYGSWVSFGAYSRAANFSSPVISRRSDDGAVHNWMFGLDGNIDYTGNGGPFRFARENWADSSFLRDIRLASYQEAAAWGGYGFRDESGWVITAVINHTADELIDHVVRRKLQKYVNGAWYDSYSV
Physico‐chemical
properties
protein length:451 AA
molecular weight: 49042,80360 Da
isoelectric point:5,83199
aromaticity:0,12417
hydropathy:-0,20665

Domains

Domains [InterPro]
DC_0590
STR
9–451
DC_0590
cd19958
STR
140–218
cd19958
YP_010844654.1
1 451
Architecture
STR
STR 9-451
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010844654.1
1 451
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,4663
Central domain 11 207 198 0,5700
C-terminal 208 451 243 0,8009
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-207
C-terminal
208-451

Taxonomy

  Name Taxonomy ID Lineage
Phage Yersinia phage PYps23T
[NCBI] 		2801356 Uroviricota > Caudoviricetes > Chaseviridae > Carltongylesvirus > Carltongylesvirus PYps23T
Host Yersinia pseudotuberculosis
[NCBI] 		633 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010844654.1 [NCBI]
Genbank nucleotide accession
NC_079178.1 [NCBI]
CDS location
range 48091 -> 49446
strand +
CDS
ATGGCTAAAGGTTGGTCATTTGGCGGCTTAGTTGCCGCCTTAAAGTCTGCTGCATTCTTAAATGCAGGTACTGCTCGTGGTGAAGTAATCACTGTTGGACAAAAGAATGCCCAGATTCCAACCACAGCATTTGTAAGAAACTTCAACTTCAATACCTACACTTTTGTAAACGGTGAGGTTCTGTATGTTGAGATGAGCTCTGCTGTCAACGTTCCCCCAGAGTTACAGAAGTGGGACCTATCTTCTGTAAGCGGTGCATATGTGATTGTAACTGTTCTCGGCATATCTGATAACAGCAACGCGACAATCCTAGTATCGCACGGCCAGGCAGCACGACCTCCGATTATGTACTACTCACAAGGTCCATCTGGTAGCAGGGCGTATACAGCACATGCCGTAATGACTTGCAAGAGTGCCGGAACCACCAACATTAATTTGCTTACAGGTGCCTCGGATGTTGGAATCTACTATCAAGAGTCTGATAGTGTAGCTGGCTCTGCTGGTGGATACCCTGCGGCAATGGCTGGTACTCTGGAAGTTCTTCCTACTGCATACAATGTTCAGCAACGTTATACATCAATCTATGGAAACGTTTGGGTTCGAAGTCGTGTACTTGATACCTCACAGAATTGGGCCGATTGGAGAGAGCTTGCAAGAGTAAACCAACGCGACCGAGTCACAGAAGTTGGTGCAATAGAGTTGTATAACGGTGCACCATACATTGACTTCCACCATGCAAACTCTGGTTTAGACTACACTGCACGTATTATCGCAGATAGTCCCGACCAGCTGACTCTACGTGGTACTGGTGGTGCAGGCTTCAAACTCAACCTGGTTGGCCAGTATCGCGGCACAACTTGGAGTCGTGGTTGGGGTCAAGAAACTGACGGCCAGGTTCCTTATGGAGTGTATGGCTGTGAAGTGGCTCCAGATTCCTGGGTTCCTATTGTAACGCTGAACACAAATACAACTGGATATGGATATGGCTCTTGGGTTTCTTTCGGTGCTTACTCTAGAGCAGCAAACTTCTCAAGTCCTGTAATCTCTCGTCGAAGTGATGATGGCGCAGTACATAACTGGATGTTTGGTCTTGATGGCAACATTGACTACACTGGCAATGGTGGTCCTTTCCGATTTGCACGAGAGAATTGGGCTGACTCCTCATTCCTGAGAGACATCCGTTTAGCGTCTTACCAAGAGGCTGCCGCATGGGGTGGCTATGGATTTCGAGATGAATCTGGTTGGGTAATCACTGCTGTAATCAACCATACTGCTGACGAACTTATCGACCACGTTGTTCGTCGTAAATTGCAGAAATATGTGAATGGAGCATGGTATGACAGCTATTCTGTGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1fe3bbb07226c7b7346463f84dc06176004417fbab057ba478e5f260f84558ad
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6042
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequence of Yersinia pseudotuberculosis phages Hammerl,J.A. and Hertwig,S. 2018-05-10 — GenBank