Protein

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Genbank accession
YP_011690479.1 [GenBank]
Protein name
capsid and scaffold protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MALNGTKYTAFARHRLVLEWRANQNIAGNYSTISVWLYLQSMDKWGRLDAPAIGDAKVTVEGATQTEKASSMLNAFQKKLLLAKEWRVNHNNDGSKRITIGGSYFVNVTFTDNGVPTYYGTITIPNFSVDLNRIPRRSSLNPVPTLNLPGNLPITINRQSSTFKHNLTAWVANRDNPTLSNDAHWTYLTNLNNVDTSGSFSFTVANNKTIFTALNNRTSWQGKVKLWTIGLDDVVSQERTYKIVPPMNAQASGGKITLNVGEKINVSLSNYRSDANFTYDGVFNISGLNIPIATNSAGNTMSYTLTQTDVDNILKKIPNADSSWGQVTVTSKYSGVQYRTPWTGQRIDITIPKNKYVPSINGTPTYEDTSSVSVGLTGDNQVALQGKSNIKVTIPANFATANGYSTLKTIDVSLGGTSKTVNYSNAETVVELGAPANHTSDTLIVTVTDSRGFKSNWTKHVDIYPYENPNMYFTVTRRNNFETTTDINVNSTWSPITIGGVNKNAIQSVTYATKVAGVGTYGEETALNFTANGSMVTVKNTPIELDNTNTYDVRLSITDKFSTFTRTATVKPGNPIMFIDADNRSLFLGNAFVDNNNNELRGLLEIERDKWQDRGLVGISLNNSDISAVNGIWFSTDTSDNAGEGLHFIKSGKSRNSLTWDDYDYFYMRDNGFYVNHNTNPIFEVSDTGTMTFPTKQLWKGVVYLNDIQEILPSKKLTECRNGWVLTFSAYESGAGRPWDINQVYIHKSVLNQFNTRGFRAMIGHGTTITFKYMYITDGRIGGHAGNGIGVNSGIAIREVSEW
Physico‐chemical
properties
protein length:803 AA
molecular weight: 88827,12260 Da
isoelectric point:8,83444
aromaticity:0,10212
hydropathy:-0,38406

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_011690479.1
1 803
Domain Start End Length (AA) Confidence
N-terminal 1 140 140 0,0683
Central domain 141 388 249 0,8007
C-terminal 389 803 414 0,4837
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-140
Central
141-388
C-terminal
389-803

Taxonomy

  Name Taxonomy ID Lineage
Phage Enterococcus phage PBEF129
[NCBI] 		2696337 No lineage information
Host Enterococcus faecalis
[NCBI] 		1351 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_011690479.1 [NCBI]
Genbank nucleotide accession
NC_101774 [NCBI]
CDS location
range 33815 -> 36226
strand +
CDS
ATGGCTTTAAACGGAACAAAGTATACAGCCTTTGCCCGACATAGATTAGTTTTAGAGTGGCGCGCAAATCAAAACATTGCAGGGAACTACTCAACAATCAGCGTATGGCTATATCTACAATCTATGGATAAATGGGGGAGACTTGATGCTCCCGCTATTGGTGATGCCAAAGTTACCGTAGAAGGAGCTACACAGACAGAAAAAGCTTCCTCTATGTTAAATGCTTTCCAAAAGAAACTATTACTAGCTAAAGAGTGGAGAGTTAACCATAATAATGACGGTTCTAAAAGAATAACTATTGGGGGTAGCTACTTTGTAAACGTTACTTTTACTGATAATGGTGTACCAACATATTACGGTACGATAACTATACCTAACTTTTCAGTAGACCTGAATAGAATACCTAGAAGAAGTTCATTAAACCCTGTCCCTACATTAAATTTACCGGGGAACTTACCAATAACAATAAATAGGCAGAGCTCCACATTCAAACATAATCTAACTGCTTGGGTGGCTAACAGAGATAACCCCACATTAAGTAATGATGCCCATTGGACGTACTTGACAAATCTTAATAATGTAGACACTAGTGGGTCATTTAGTTTTACAGTAGCAAATAACAAAACTATTTTTACTGCATTAAACAATAGGACTAGTTGGCAAGGCAAGGTTAAACTATGGACTATAGGGTTAGATGATGTAGTTAGTCAGGAGAGAACATACAAGATTGTCCCCCCAATGAATGCACAAGCATCGGGAGGTAAGATAACCTTAAATGTGGGAGAGAAAATCAATGTATCACTAAGTAACTATCGGTCTGATGCAAACTTTACTTATGATGGGGTATTTAACATTAGTGGGCTCAACATACCCATTGCTACAAATTCAGCAGGGAACACAATGTCGTATACACTAACTCAAACAGATGTAGACAATATATTGAAGAAAATACCAAATGCGGATTCCTCGTGGGGTCAAGTAACTGTAACAAGTAAGTATAGTGGAGTACAATACAGGACTCCATGGACAGGGCAGAGAATAGATATAACTATACCTAAAAACAAGTATGTACCAAGCATTAATGGTACCCCTACTTATGAAGATACAAGTAGTGTCTCTGTCGGGCTTACAGGTGACAATCAGGTAGCTCTTCAAGGTAAGTCTAATATCAAAGTGACTATCCCTGCTAACTTTGCAACGGCTAATGGTTACTCTACTTTGAAAACAATTGATGTGTCTTTAGGCGGTACATCAAAAACAGTCAACTATTCAAATGCAGAAACAGTTGTAGAGTTAGGGGCTCCCGCTAACCATACATCAGACACCTTAATAGTCACAGTAACTGACAGTCGTGGGTTTAAGTCTAACTGGACAAAGCATGTAGACATTTACCCCTACGAAAACCCAAATATGTACTTTACAGTCACACGTAGAAATAACTTTGAGACAACTACAGATATTAATGTTAATAGTACATGGTCTCCTATCACTATAGGTGGTGTAAATAAAAATGCTATCCAATCAGTGACCTATGCAACAAAAGTAGCGGGTGTTGGCACTTATGGAGAAGAAACTGCTTTAAATTTTACAGCTAATGGTAGTATGGTAACAGTAAAAAATACACCAATAGAATTAGATAATACTAATACATACGACGTCAGGTTAAGCATAACTGATAAGTTTAGCACGTTTACTAGAACAGCTACTGTTAAACCGGGTAACCCTATCATGTTTATTGATGCCGATAATCGAAGTCTGTTTTTAGGTAATGCCTTTGTTGACAATAACAATAATGAGCTAAGAGGCTTATTAGAGATAGAAAGAGATAAGTGGCAGGATAGGGGTTTAGTAGGAATATCATTAAACAATAGTGATATATCAGCAGTCAACGGTATATGGTTCTCAACAGATACCTCAGATAACGCAGGTGAAGGGCTCCACTTTATTAAATCAGGTAAATCAAGAAATTCATTGACTTGGGATGATTATGATTACTTTTATATGAGAGATAACGGGTTCTATGTTAACCACAATACTAACCCTATATTTGAAGTTTCTGACACTGGTACGATGACGTTTCCTACTAAACAGCTTTGGAAAGGGGTTGTCTATTTAAACGATATACAAGAAATTTTACCTAGTAAAAAACTGACAGAATGCCGAAACGGATGGGTTTTGACCTTCTCAGCATATGAGTCAGGTGCGGGGCGACCTTGGGATATAAATCAGGTATACATCCACAAGTCTGTGTTAAACCAGTTTAATACAAGAGGATTTAGGGCTATGATAGGTCATGGAACTACGATAACATTTAAATATATGTATATAACTGACGGTCGTATAGGTGGACATGCTGGCAATGGTATAGGAGTTAACAGTGGCATTGCCATAAGGGAGGTATCAGAATGGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
00478ffcef56175e49ff58a02760dfdbdae7fbecd5e8272f273f1b1f07de788c
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2991
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Comparison of Enterococcus faecalis Biofilm Removal Efficiency Among Bacteriophage PBEF129, Its Endolysin, and Cefotaxime Myung,H., Oh,H., Hwang,Y. and Hong,H. — — GenBank