Protein

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Genbank accession
XMR02077.1 [GenBank]
Protein name
E3 ubiquitin-protein ligase HERC1
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MLPFARMVKYANIAPGPEPIEFSNVLQQHYTNCMYLHSPTNTLYGYGSNNLSQLGLGNSAAVSSFTVLARNCAAYWLGVHGSLMIDLDNKIYYTGSVAAFSDYGDATPVGGYLRTWTDVTSSFNKIGVMANMIKSVYIGESTRILLTDNRVIACGKNTNGECGSGNQNSIPTLTVMTNMGEVIDMACSLQGTHYIKSNKQAWFCGKDNFGESGCGGSSMIYLNKYVISDVEHISATYNVTWWFTTGGPVYYSGVNNTGEAGNGTTTSVNQLTPIRNTSVTVDVSKYSNFICPSNMGTSSIGSPMAQYPSYVRSSGANSYGQEGNGTNTLVRTWNIFNLSAISGGYDNVLMASKDWSRTIIITKDYKLYACGGWNGNGGRLPDGTYSITTLTLMPTQLWQQ
Physico‐chemical
properties
protein length:400 AA
molecular weight: 43324,14580 Da
isoelectric point:6,92233
aromaticity:0,11000
hydropathy:-0,17925

Domains

Domains [InterPro]
DC_0433
ATT
1–140
DC_0433 DC_0433
IPR009091
STR
16–299
IPR009091 DC_1778
IPR009091
STR
36–276
IPR009091 IPR009091
IPR051553
Unmapped
42–382
IPR051553
DC_0433
ATT
124–227
DC_0433
XMR02077.1
1 400
Architecture
ATT
STR
ATT 1-314 | STR 315-399 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XMR02077.1
1 400
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,1296
Central domain 11 208 199 0,3289
C-terminal 209 400 191 0,7179
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-208
C-terminal
209-400

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage Turkey5
[NCBI] 		3375711 No lineage information
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XMR02077.1 [NCBI]
Genbank nucleotide accession
PQ471516 [NCBI]
CDS location
range 344529 -> 345731
strand -
CDS
ATGTTACCTTTTGCTAGAATGGTTAAGTACGCGAATATTGCACCAGGGCCAGAACCAATAGAGTTCTCAAATGTTTTACAACAACATTATACAAACTGTATGTATCTACATAGCCCAACTAATACTTTATATGGTTATGGTAGTAATAACTTGTCTCAATTGGGTCTTGGGAATTCAGCAGCAGTTTCGTCATTTACAGTACTTGCAAGGAACTGTGCAGCCTATTGGCTTGGTGTTCATGGTTCATTGATGATTGATTTGGATAATAAAATATACTACACTGGGTCGGTGGCTGCATTTTCTGATTATGGAGATGCAACACCTGTTGGTGGTTATTTGAGAACATGGACTGATGTTACTTCTTCATTTAATAAAATTGGCGTCATGGCTAATATGATCAAGAGTGTATATATAGGTGAAAGTACTAGAATATTATTAACCGATAATAGAGTAATTGCGTGTGGAAAAAATACTAATGGTGAATGTGGGTCTGGTAATCAAAATTCCATACCTACACTAACAGTTATGACTAATATGGGTGAAGTTATTGATATGGCATGTTCATTACAAGGAACGCACTATATTAAATCAAATAAACAGGCATGGTTTTGTGGTAAGGATAACTTCGGTGAAAGTGGTTGTGGTGGTAGTTCTATGATATATTTGAACAAATATGTGATTAGTGATGTAGAACATATTAGTGCTACATACAATGTTACTTGGTGGTTTACTACTGGTGGGCCTGTATATTATAGCGGGGTTAACAATACAGGAGAAGCTGGTAATGGTACGACTACATCTGTAAATCAGCTAACACCAATTAGGAACACATCGGTCACGGTTGATGTAAGTAAGTACAGTAATTTTATTTGTCCAAGTAATATGGGAACTTCATCAATTGGTTCACCTATGGCACAATACCCATCATATGTTAGAAGTAGTGGTGCTAACTCATATGGTCAAGAAGGTAATGGAACTAATACATTAGTTAGAACCTGGAATATTTTTAATCTTAGTGCAATAAGTGGTGGTTATGACAATGTTCTTATGGCATCTAAAGATTGGAGCAGAACCATAATAATTACTAAAGATTATAAATTATATGCATGTGGTGGCTGGAATGGTAATGGTGGTAGATTGCCTGATGGCACTTATAGTATTACTACACTAACATTAATGCCAACGCAGTTATGGCAACAATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
a2f9d1a3e6b1900e84ee0f8a259689fc9f8ba20595d00aa18524307cad69c7bf
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8409
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Transient expression effect of genes from a Jumbo E. coli phage Petrzik,K. and Brazdova,S. 2023-07-26 — GenBank