Protein

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Genbank accession
YP_009798895.1 [GenBank]
Protein name
colanic acid degradation
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MNPQFSQPGGSVSKDVNKQSIARTLGIKTSEVAYLKVGVSIAGVKTLFDSSSQLAFRNVNSTGNVVSWSVQNNVLTLVTTTGNFTLYLSRIWDRQVIQFEDFGGFTSSVVDQTPFINLASECARSTGLEIFCRGSYYVTGVVNLSGVKAGGFTLLGPTTSTSQQILLTQSSQLSHFTLDKVYIRHTGGDIELTDFLIKNTRSTAAVISTNLTALGDLSIKRGAFTGCYYGILRQGDPDTSAALRSVYLQNLRFTDMQADCIELNLGINDINTVIDNIYIDTVNHTGTNAFWGIAIGIAGKGNYTLTDNPSLLYKNLSISNCYIYKARQCLHLEKCSGAHIRNIEMYPDSSMSPNTGLDTAGLVIYGSMNTVISGITGNPLTDDAKMIWQTWGVVSGGYISAGRNLSISEVNIKGTIQLEMSATNTFLASLKLNNVTATTISLYGHMSFLGLTNVESEFLNIDIHRILGNGKDNTRRLNKCVASFNRVKCFNMNLNANGLMLGNIAFDQLEVTDCNFQIEKTTNTSTVLRGTPITKVDQTFYYNGTGFPIGYPFKKGDKIVDTNGVIYTVTSPGAKFKTTTATTAIAALAVGDSRVFANGSENWVSTFPKTAGVAVTIPGAGVGGADLQTRIIRSGFVSGGVYCFDIEDTVSTATSAGVLIYPTNECTFITNGVS
Physico‐chemical
properties
protein length:674 AA
molecular weight: 72516,24730 Da
isoelectric point:7,47441
aromaticity:0,08902
hydropathy:0,03323

Domains

Domains [InterPro]
G3DSA:3.30.2020.50
ATT
1–91
G3DSA:3.30.2020.50 IPR011050 DC_0045
G3DSA:3.30.2020.50
ATT
1–95
G3DSA:3.30.2020.50 IPR011050
YP_009798895.1
1 674
Architecture
ATT
STR
RBD
ATT 1-95 | STR 96-346 | RBD 380-672 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009798895.1
1 674
Domain Start End Length (AA) Confidence
N-terminal 1 112 112 0,9870
Central domain 113 537 426 0,9891
C-terminal 538 674 136 0,8247
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-112
Central
113-537
C-terminal
538-674

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage vB_KpnM_KpS110
[NCBI] 		2079262 Uroviricota > Caudoviricetes > Pantevenvirales > Taipeivirus > Taipeivirus KpS110
Host Klebsiella pneumoniae
[NCBI] 		573 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009798895.1 [NCBI]
Genbank nucleotide accession
NC_047932 [NCBI]
CDS location
range 90151 -> 92175
strand +
CDS
ATGAATCCGCAATTTAGTCAACCTGGTGGTTCCGTCTCTAAAGACGTGAACAAACAATCCATAGCCCGGACACTCGGGATCAAAACCAGTGAAGTTGCTTATCTCAAAGTGGGCGTCAGTATCGCGGGTGTTAAAACTCTGTTTGATAGTAGTAGTCAACTGGCATTTAGAAATGTGAATTCTACTGGGAATGTCGTCTCTTGGTCTGTACAGAACAACGTATTGACTTTAGTGACCACCACTGGAAATTTCACCCTTTATCTTAGTCGGATTTGGGACCGCCAAGTTATACAGTTTGAAGATTTTGGTGGGTTTACATCATCTGTGGTGGATCAAACCCCATTTATAAATTTAGCGTCAGAATGTGCCAGATCCACCGGGCTGGAAATTTTCTGTCGAGGATCTTATTATGTTACTGGTGTTGTGAATCTTTCCGGTGTCAAAGCAGGTGGATTTACGCTGCTGGGGCCGACAACATCCACATCACAGCAAATTTTGCTGACACAGTCTTCTCAGTTGTCACACTTCACGTTAGACAAGGTGTATATCCGTCACACTGGTGGGGATATTGAATTAACAGATTTTCTTATAAAAAATACCCGATCCACCGCTGCGGTAATAAGCACGAATTTGACTGCATTAGGCGACCTTTCCATCAAACGTGGGGCTTTCACCGGGTGTTATTATGGTATATTACGACAAGGCGACCCAGACACTTCAGCAGCCTTGAGAAGTGTGTACCTACAAAACCTGAGATTCACGGACATGCAGGCTGATTGCATTGAGTTGAATTTAGGTATTAACGATATCAATACTGTTATTGACAACATCTATATCGACACAGTTAACCATACTGGGACAAATGCTTTTTGGGGAATTGCTATCGGTATCGCAGGCAAAGGGAATTATACACTTACCGATAATCCATCCCTATTATACAAAAACTTATCCATCAGCAATTGCTATATCTACAAAGCTCGCCAATGTTTGCATTTAGAAAAATGTTCTGGGGCGCACATCAGGAACATAGAAATGTACCCGGACAGTTCAATGTCTCCTAACACAGGCTTGGACACTGCTGGCCTCGTTATTTATGGCTCTATGAATACCGTCATATCCGGTATTACGGGAAATCCGTTGACAGATGACGCGAAAATGATATGGCAAACTTGGGGTGTTGTTTCAGGTGGATACATAAGTGCGGGTAGAAATCTATCTATTTCTGAAGTCAACATCAAAGGAACTATACAATTGGAAATGTCGGCCACGAATACGTTCTTGGCTTCTTTGAAACTTAACAATGTAACAGCGACGACAATCAGCCTGTATGGGCATATGTCATTCTTGGGTTTAACCAATGTTGAATCTGAATTCCTGAACATCGATATACATCGGATATTAGGGAATGGAAAGGACAACACACGTCGCTTGAACAAATGTGTTGCATCATTCAACCGAGTGAAATGCTTCAATATGAATTTGAATGCCAATGGTCTTATGTTGGGTAATATAGCATTCGATCAATTAGAAGTCACGGATTGTAATTTCCAGATTGAAAAAACCACGAATACTTCTACTGTTCTCAGAGGTACTCCGATAACAAAAGTGGATCAGACTTTCTATTATAACGGCACTGGTTTCCCGATTGGTTATCCATTTAAGAAAGGTGATAAAATTGTGGATACCAACGGTGTGATTTATACAGTTACTTCCCCTGGTGCCAAATTTAAAACTACCACAGCAACCACCGCTATCGCGGCTTTAGCTGTTGGAGATAGTCGGGTGTTTGCTAACGGTTCCGAGAACTGGGTTTCCACCTTCCCGAAAACGGCTGGTGTTGCTGTCACTATACCTGGGGCTGGTGTTGGTGGGGCCGACCTGCAAACACGAATAATTCGTTCAGGGTTTGTTTCTGGTGGTGTGTATTGCTTTGACATCGAAGACACGGTTTCCACAGCAACATCGGCTGGGGTTTTAATTTATCCTACCAATGAATGCACCTTTATCACTAATGGAGTTTCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c8dc378641319bb433ef23a55d0820a51e3af426bc0accfed3c4bc8add58e600
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7669
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome of Klebsiella pneumoniae bacteriophage vB_KpnM_KpS110 Verevkin,V.V., Solovieva,E.V., Krasilnikova,V.M., Kislichkina,A.A. and Volozhantsev,N.V. 2023-05-17 — GenBank