Protein

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Genbank accession
WNA15868.1 [GenBank]
Protein name
structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MKKIKGNLDSKSSITSASSSVVTGLNNVTPDGAGNINYPMVNKTDFTKMLNMLPISRVGTLSYLPMNVSGSFEGGTTMSYRSCFPGLLENDGTLVFLRPGTNGSTINYYYSYVNNALGTSSLKATHTNKGYFTSSSDDICMLNSDTQNVLFYQNQTKGTIGLILTNGTMDQRQHVGATLPVSSMPYYNQYALKVGTYIYVFSLYSSTISATDISNYYTNLTDPFKIIVYRIPVSEIQSGTINTIEQVSGITGTDLYGNSTNSDGIIIAPKALSNNLSDQAYAKYDTNIAGGTICGYTSVGLKAVYDGNNSINLCWTNNCYFTNSNQRKDTYVGFNTYYNVSSKSYSTNLTTGSAITATASSSTSPITISNPYEITGKQLDGNYDVISDGVQGSAFISDGGYLFTITDKYVLSDFYFIIRASIQGFTTKYSAMNVRSRTLNNVIKYQQQSSYGSVIGDNLIGAIPVSSTKVLTASNGTYNGVNYSASSSKSVADFGTTRTFTYNSVQKGTRTGYAPQADRAPVTANPAYLTYGLVSLIDAAGNCQAYGTSFVEGFKNSTGMAFNATSKTFTGVLNVQQSAYDNARNAVISAQNISGYTTTRLALYYVPDSSYTSSIGMLYVTYSNMVRIYIFGCTCTVSNSTITNITYNTFYNMDQVSPAFSVSSGSPYYKGGLVVAKYSDFTFIGFDGTCSLNVPGDTNERTYAYSASTTGVVDSTSFLSHNSYHTAQLSDNYWYSAIPNYGFGCFIFGNNDFGTKLIFRQFGNTQSAYANLKNLTNYTDTVILAQDVAQGFQVYFTEEVPVLVSGSFYKLPISTIDLLTIKANPANTTFYGYVQIVNGVCKYTISTTVLPEDLNTIFFCTIVTDASRISSISAEKVTRFMNYRLSTTNKGSAIPVSTGAPTDSNVTRWKN
Physico‐chemical
properties
protein length:911 AA
molecular weight: 98841,92580 Da
isoelectric point:8,17216
aromaticity:0,12514
hydropathy:-0,13963

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WNA15868.1
1 911
Domain Start End Length (AA) Confidence
N-terminal 1 41 41 0,8860
Central domain 42 294 254 0,6996
C-terminal 295 911 616 0,3852
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-41
Central
42-294
C-terminal
295-911

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage XaC1
[NCBI] 		3073039 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Xanthomonas vesicatoria
[NCBI] 		56460 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WNA15868.1 [NCBI]
Genbank nucleotide accession
OR258281 [NCBI]
CDS location
range 113279 -> 116014
strand +
CDS
ATGAAAAAAATTAAAGGGAATTTAGACAGCAAATCCAGTATAACTAGTGCATCATCTTCTGTAGTTACTGGTTTAAACAATGTTACACCAGACGGTGCTGGAAACATTAACTACCCTATGGTGAATAAAACTGATTTTACCAAAATGCTTAATATGTTACCAATTTCACGTGTTGGTACATTATCATATCTTCCAATGAACGTAAGTGGTTCATTTGAGGGTGGTACAACAATGTCATATCGTTCTTGTTTTCCAGGATTATTAGAAAATGACGGTACTTTGGTATTCCTACGTCCGGGAACGAATGGTAGTACTATTAACTACTATTATTCTTATGTTAATAATGCACTAGGTACTAGTTCGTTAAAAGCTACACATACAAATAAAGGCTATTTTACATCAAGCTCAGATGATATTTGTATGCTCAATTCTGATACACAGAATGTTTTGTTTTATCAGAATCAGACGAAAGGTACTATTGGTCTTATTTTAACAAATGGAACCATGGATCAACGCCAACATGTTGGTGCAACTCTTCCAGTAAGTTCTATGCCGTATTATAACCAGTACGCTTTGAAAGTCGGAACATATATCTATGTTTTCTCTTTATATTCAAGTACTATAAGTGCCACTGATATTAGTAATTATTATACTAATCTAACCGACCCATTCAAAATTATAGTATATCGTATTCCAGTATCTGAAATTCAATCAGGTACAATTAATACAATTGAGCAGGTTTCTGGAATTACCGGTACTGACCTGTACGGTAACAGTACTAATTCTGATGGTATAATTATAGCACCTAAAGCACTATCTAACAACTTGTCAGACCAAGCTTATGCGAAGTATGATACTAATATTGCAGGTGGTACAATTTGTGGGTATACATCCGTTGGTCTAAAAGCGGTGTATGATGGTAATAATAGTATTAACTTATGCTGGACAAACAACTGTTATTTTACTAATAGTAATCAGCGTAAAGATACTTATGTAGGATTCAATACGTATTATAATGTAAGTTCAAAATCATATAGTACTAACCTTACAACTGGTTCTGCTATTACTGCTACTGCATCTTCCAGTACATCACCAATAACAATTAGTAATCCATATGAGATAACTGGTAAACAGTTAGACGGGAATTATGATGTTATTTCTGATGGTGTGCAGGGTTCAGCTTTTATAAGTGATGGCGGTTACTTGTTTACTATAACTGATAAGTACGTACTGAGTGATTTTTATTTCATTATCAGAGCATCAATTCAAGGTTTTACTACCAAGTATAGTGCAATGAATGTTCGTTCAAGAACACTGAATAATGTTATAAAGTATCAGCAACAATCATCATACGGTTCAGTAATAGGTGATAACCTTATAGGTGCAATTCCAGTGAGTTCAACTAAAGTACTGACTGCAAGTAATGGTACTTATAATGGCGTGAACTACAGTGCAAGTTCTTCTAAATCAGTTGCTGATTTTGGAACAACAAGAACATTCACATACAATTCAGTACAAAAAGGTACTAGAACTGGTTATGCACCTCAAGCAGACCGAGCACCAGTAACTGCTAACCCGGCGTATTTGACTTATGGCTTAGTATCTCTGATTGACGCTGCTGGTAACTGTCAGGCATATGGTACATCATTTGTCGAAGGATTCAAGAATTCTACCGGGATGGCGTTTAATGCAACTTCCAAAACATTTACTGGAGTACTTAACGTTCAGCAAAGTGCATATGATAATGCAAGAAATGCGGTTATTAGTGCACAGAATATTTCTGGTTATACAACGACTAGACTTGCACTTTATTATGTTCCTGATTCGTCATATACTTCCAGTATAGGTATGTTGTATGTAACTTATAGTAATATGGTAAGAATATATATTTTCGGTTGTACTTGTACAGTAAGTAACAGTACTATTACTAACATAACTTACAATACTTTTTACAATATGGATCAGGTTTCTCCAGCATTTTCAGTTTCTAGTGGTTCACCATATTACAAAGGTGGTTTAGTAGTAGCAAAATACTCAGATTTCACTTTTATTGGATTTGATGGTACTTGTTCTCTTAATGTTCCTGGTGATACTAATGAAAGAACATATGCTTATAGTGCAAGTACGACAGGTGTAGTTGATAGTACTTCATTCCTAAGTCATAATTCTTATCATACTGCACAGCTTAGTGATAACTACTGGTATAGTGCAATACCTAACTATGGATTTGGTTGTTTTATATTTGGTAATAATGACTTTGGTACTAAACTTATTTTCAGACAGTTTGGTAATACACAAAGTGCTTATGCTAATCTTAAAAATTTAACCAATTATACCGATACTGTAATTCTGGCACAAGATGTAGCACAGGGTTTTCAAGTTTATTTTACTGAAGAAGTTCCAGTATTAGTGAGTGGAAGTTTCTACAAACTGCCAATCAGTACCATAGACTTACTTACTATAAAAGCTAATCCTGCAAACACTACATTCTATGGCTATGTTCAGATCGTAAACGGTGTATGTAAATACACTATCAGTACTACCGTTCTTCCTGAAGATCTTAACACTATATTTTTCTGTACTATTGTAACTGACGCAAGCCGTATAAGTTCTATAAGTGCAGAGAAAGTTACCAGATTCATGAATTATCGTCTTAGTACAACAAACAAGGGTTCGGCTATACCGGTAAGTACTGGTGCACCGACTGACAGTAACGTTACAAGATGGAAAAATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2d4aa4b4131dcf38d69f66c73951e06e9784b088431443040bc01809cc34e3f2
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2704
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of two novel jumbo bacteriophages infecting Xanthomonas vesicatoria isolated from agricultural regions in Mexico Rubi,L.M., Villicana,M.C., Amarillas,L.A., Carrillo,A. and Leon,J. 2014-03-01 — GenBank