Protein

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Genbank accession
YP_007672987.1 [GenBank]
Protein name
short tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,76
Protein sequence
MFYQERHEAKGAVIGTIMAWTGGLSSIPHGWVICDGGTLPADDFPLLAATIGDSYNMGTSSNFNGTFPSYTGLITLPDLNGRMLMDIENDYFPLTGRAADSDTDARSIMSSIVGSKKQNTQGMALTGSYTDITTDIIFQISPSDRTGYQGKITGNTILAGEGTKTVYVAPRKLGRKHITRHNHPGNVSTIRNDDPRYPGDGVVPYFPISYTLYVSAVDIDSGGDVGDVGDGDLIFFGWTDNNIQGRHTGDPTERSEVGTPVNIRPGIIGGLFGNFQSVNDAPNYPALLSYRWPEQGNNGEESPDGRNDGVPNKVFGLSYSESPPINLKPRELRYTPLTPAFLDTDKHEDAYFIGGPNEQSIPYGAGGNEVNVPVGIRNYFNDTQPENDVSGRTLLSHPAYDFLADAPGTDKIYPHDHGTFDIDFDSTRLKPQSSILANVNLPPSTNPDNTQNEGALSIEFTTAQPKLTCIYIIRAY
Physico‐chemical
properties
protein length:476 AA
molecular weight: 51651,43160 Da
isoelectric point:4,69993
aromaticity:0,09454
hydropathy:-0,46723

Domains

Domains [InterPro]
IPR037053
ATT
4–67
IPR037053 DC_0344
SSF88874
STR
12–85
SSF88874
IPR011083
ATT
15–72
IPR011083
YP_007672987.1
1 476
Architecture
ATT
STR
STR
ATT 4-72 | STR 73-85 | STR 90-476
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007672987.1
1 476
Domain Start End Length (AA) Confidence
N-terminal 1 94 94 0,1248
Central domain 95 349 256 0,6966
C-terminal 350 476 126 0,7679
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-94
Central
95-349
C-terminal
350-476

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-CAM1
[NCBI] 		754037 Uroviricota > Caudoviricetes > Pantevenvirales > Anaposvirus > Anaposvirus socalone
Host Synechococcus sp.
[NCBI] 		1131 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007672987.1 [NCBI]
Genbank nucleotide accession
NC_020837.1 [NCBI]
CDS location
range 61374 -> 62804
strand -
CDS
ATGTTTTATCAGGAAAGACATGAAGCAAAAGGTGCCGTTATCGGCACCATTATGGCGTGGACAGGGGGATTAAGTTCTATCCCCCATGGTTGGGTCATTTGTGATGGGGGAACATTACCTGCGGATGATTTCCCTCTGTTGGCTGCTACTATTGGTGACTCATATAACATGGGAACTAGTAGTAATTTCAACGGAACATTCCCATCATATACTGGACTGATTACTCTACCAGATCTAAATGGTAGAATGCTGATGGATATTGAGAATGACTATTTTCCTCTTACTGGAAGAGCGGCGGATAGTGATACTGACGCTAGATCTATTATGAGCTCTATCGTTGGTAGTAAGAAACAGAATACTCAAGGAATGGCACTTACTGGTAGTTATACTGACATCACGACAGACATTATTTTCCAAATTAGTCCAAGCGACAGAACTGGTTATCAAGGAAAAATTACTGGTAATACTATTCTTGCTGGTGAAGGAACAAAGACAGTATATGTTGCTCCTAGAAAACTAGGTAGAAAGCATATTACTAGACATAATCATCCTGGAAACGTCTCGACTATTAGGAATGACGACCCGAGATATCCTGGTGATGGTGTTGTTCCTTACTTTCCAATATCATATACATTATATGTGTCAGCGGTTGACATCGACAGTGGTGGTGATGTTGGTGATGTTGGTGATGGTGACCTTATATTCTTTGGTTGGACTGATAATAATATCCAAGGCAGACATACTGGTGATCCTACAGAAAGAAGTGAAGTTGGAACTCCTGTAAACATTCGACCAGGTATCATTGGTGGTTTGTTTGGAAATTTCCAATCTGTAAACGATGCACCAAATTATCCTGCACTACTTTCTTACAGATGGCCAGAGCAGGGAAATAATGGTGAGGAGAGTCCTGATGGAAGAAATGATGGTGTTCCTAATAAAGTTTTTGGTTTATCGTATTCAGAATCTCCTCCAATTAACCTTAAACCAAGAGAGTTGAGATATACGCCATTGACGCCAGCTTTCCTTGATACAGATAAACACGAGGATGCATACTTTATTGGCGGACCAAATGAACAAAGTATTCCATATGGTGCTGGTGGAAATGAAGTTAATGTTCCAGTGGGAATCAGGAATTACTTTAATGATACTCAACCAGAAAATGACGTTAGCGGCAGAACTTTGTTGAGTCACCCAGCATATGACTTTCTAGCAGATGCACCTGGTACGGATAAAATTTATCCTCATGATCATGGCACATTTGATATTGATTTTGATTCGACCAGATTAAAACCCCAGTCGAGTATTCTTGCTAATGTTAATTTGCCCCCTAGCACAAATCCAGACAATACGCAGAATGAAGGAGCATTATCAATTGAATTCACTACTGCACAACCCAAACTCACCTGTATATACATCATCAGAGCATACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5dba05a49ca2f84de27eb6582831500732005f52728beeaac4b1910cbc6746f3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3620
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Synechococcus phage S-CAM1 0208SB26 Henn,M.R., Martiny,J., Weihe,C., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank