Protein

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UniProt accession
A0A8S5Q4V8 [UniProt]
Protein name
Pectate lyase
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MLWYGLDNTGEKDNADLLQTILDSVPNGTTLYFPTGEYLLSHGVTVNKSIQLLGDRKGRYLAANDSAKIHGSCLKFMDSVSNATMITQGNDCWSLTMYNLILLGNSGKFYDDGLNDETIPYAEYRYEVINENVNGVLCVHSTDISDCSFCAFSGYGLSNAQAQNINQCMFYGNGIGIYVAKNDIMLRDCYITAGKTGIYCPGSKNIMIFGCYLDLFAEHAIYCESYLSGFINAYIDHTIYSGIHADTLNNIFVIANIHRTGMYYSGKTIDDLKVSDNAADELENFRKASAISCSKTLKSTFQLGANSKSNDDAGTSNKSSPILALYVTQAYTSILIGAEMDVYVRVFNTSGALTLISNKGVVCYSNAIIRSTPNLVIKSYSPSAGSKAQDIGDIWYDSYKKELYMATAVTDLSTTWEKQYMAKDIDALEARIAALESK
Physico‐chemical
properties
protein length:438 AA
molecular weight: 48124,75240 Da
isoelectric point:4,98463
aromaticity:0,10731
hydropathy:-0,09543

Domains

Domains [InterPro]
IPR012334
STR
1–338
IPR012334 Coil
IPR011050
STR
3–279
IPR011050
IPR024535
ENZ
4–210
IPR024535
A0A8S5Q4V8
1 438
Architecture
STR
STR 1-338 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
A0A8S5Q4V8
1 438
Domain Start End Length (AA) Confidence
N-terminal 1 11 11 0,8102
Central domain 12 280 270 0,9803
C-terminal 281 438 157 0,8965
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-11
Central
12-280
C-terminal
281-438

Taxonomy

  Name Taxonomy ID Lineage
Phage Siphoviridae sp. ctLNL10
[NCBI] 		2825453 Uroviricota > Caudoviricetes >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
DAE13795.1 [NCBI]
Genbank nucleotide accession
BK015570 [NCBI]
CDS location
range 5160 -> 6476
strand +
CDS
GTGCTCTGGTATGGGCTGGATAATACTGGAGAAAAGGATAATGCTGATTTATTGCAAACTATTTTAGACAGCGTTCCTAATGGTACAACGCTATATTTCCCGACAGGAGAGTATTTGCTTAGCCATGGTGTTACCGTAAATAAAAGTATACAGCTGTTAGGAGATAGAAAAGGTAGATATCTGGCTGCCAATGATAGTGCAAAAATCCATGGATCATGTTTGAAATTTATGGATTCTGTGTCGAATGCAACAATGATTACACAAGGAAATGATTGTTGGTCCCTAACAATGTATAATCTAATTCTTTTGGGAAACAGCGGAAAGTTTTATGATGATGGCTTAAATGATGAAACAATCCCATATGCAGAATATCGCTATGAAGTGATAAATGAAAATGTTAATGGGGTTCTTTGTGTTCATAGTACAGATATTTCAGACTGTTCATTTTGTGCTTTTAGTGGATATGGTTTATCAAATGCCCAGGCACAGAACATTAATCAATGTATGTTTTATGGTAATGGAATCGGTATTTATGTTGCTAAAAATGATATTATGCTGAGAGATTGTTATATTACGGCGGGTAAAACGGGTATTTATTGTCCTGGCTCAAAAAATATAATGATATTTGGCTGTTACTTAGATTTGTTCGCAGAACATGCAATTTATTGCGAAAGTTATTTAAGCGGTTTTATTAATGCATATATAGATCATACAATCTATAGTGGCATTCATGCAGACACGTTGAATAATATATTTGTAATAGCAAATATACATAGAACTGGCATGTACTATAGTGGAAAGACAATTGATGATTTGAAAGTATCTGATAATGCTGCTGATGAATTAGAAAATTTTAGAAAAGCATCTGCAATTTCATGTAGTAAAACTTTAAAATCCACATTTCAATTGGGAGCAAATTCAAAATCGAATGATGATGCTGGCACATCAAATAAAAGTTCTCCAATACTTGCATTGTATGTTACACAGGCATACACATCAATTCTTATAGGTGCAGAAATGGATGTATATGTTAGAGTATTTAATACTTCAGGAGCTTTGACCCTAATAAGCAATAAAGGAGTAGTTTGTTATAGTAATGCTATCATCAGAAGTACTCCCAATCTGGTAATTAAATCTTATTCACCAAGCGCTGGATCTAAAGCACAGGATATAGGTGACATATGGTATGACTCCTATAAAAAGGAATTGTATATGGCTACTGCTGTTACAGATTTATCTACTACATGGGAAAAACAGTATATGGCAAAGGATATAGATGCATTAGAAGCAAGAATAGCAGCATTAGAGAGTAAATAA

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0044423 virion component Cellular Component IEA:UniProtKB-KW (UniProt)
GO:0016829 lyase activity Molecular Function IEA:UniProtKB-KW (UniProt)
GO:0051701 biological process involved in interaction with host Biological Process IEA:UniProtKB-ARBA (UniProt)
GO:0019058 viral life cycle Biological Process IEA:UniProtKB-ARBA (UniProt)

Tertiary structure

PDB ID
8bd88e4badb54cddf72d965a9adfb499281cc73422046bf8e80eb4194a5eef94
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,5613
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50