Protein

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Genbank accession
APC45989.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MVNTTWTKHSFSAGELSPRLLQSRKDLSLHAQGVAKSRNLIPLRYGPLVSMPLMQEYRDCRLDPRSNRVFSFSIPDGGYALMVFGDKKLQIVVVRSSTKWSPALFGKTYKTPYTFKDNKSLEYAVFGSTAVFVHKDHPPHHLLYIQDGDKISFTFDEIKFLPPPWLGDGMISGVKSNAKLSISQADTSTARITSDMKIFKPLDKGRSIRLGCHPPEWAKNTNYSIGAYIVADDKVYRSLTTGRSGDRFGYSKGATYVKDNNITWITVLNLSSKTSRESASGAVDPYYVWGDIKDVSKDGRSISVAPQSQTLFQAGVSVVSWFMSAWGEQEGYPSHVTFHNNRLLFSGSKGDELSVYLSSFGAFYDFSLDGEYGCYDPTKALTTAVTDFSASTIHWMHPFGEGVLVGCDTSLWLLSISLSKGLSIDFRRVSGSGVYACPPVSVGDCLVFVCGVGRRIKYISGSTEQGFRFNEITQLADHLFNQRILQLVYQEEPHSIVWVVLEPKDNSFPRLLGCRFSAEGEGDFAWHTHMISDKHYVLSAASFPNDNRGGTSLWMLVALSAGEERSFTVRLKLLDDFK
Physico‐chemical
properties
protein length:578 AA
molecular weight: 64407,29730 Da
isoelectric point:8,55607
aromaticity:0,11938
hydropathy:-0,21332

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
APC45989.1
1 578
Domain Start End Length (AA) Confidence
N-terminal 1 195 195 0,8996
Central domain 196 394 200 0,0466
C-terminal 395 578 183 0,0434
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-195
Central
196-394
C-terminal
395-578

Taxonomy

  Name Taxonomy ID Lineage
Phage Liberibacter phage SGCA5-1
[NCBI] 		1903184 Uroviricota > Caudoviricetes >
Host Candidatus Liberibacter asiaticus
[NCBI] 		34021 Bacteria > Proteobacteria > Alphaproteobacteria > Rhizobiales > Rhizobiaceae > Candidatus Liberibacter

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
APC45989.1 [NCBI]
Genbank nucleotide accession
KX879601 [NCBI]
CDS location
range 10906 -> 12642
strand -
CDS
ATGGTTAATACGACGTGGACAAAGCATTCTTTTTCCGCTGGCGAGCTGTCGCCACGTCTTCTTCAGTCCCGTAAAGACTTGTCTCTGCACGCTCAAGGGGTTGCGAAGAGCCGCAATCTTATCCCTTTAAGATATGGACCCCTGGTTTCTATGCCTCTTATGCAAGAGTACAGAGATTGTCGTTTAGATCCAAGATCAAACCGTGTGTTTTCTTTTAGCATCCCAGACGGTGGTTATGCGTTAATGGTTTTTGGGGATAAAAAACTACAGATCGTCGTTGTAAGATCTTCTACGAAGTGGTCTCCGGCTCTTTTCGGGAAAACGTATAAAACCCCCTATACTTTTAAGGATAATAAGAGCTTAGAATATGCGGTTTTTGGATCAACTGCGGTTTTTGTCCATAAGGATCATCCACCCCACCACCTTCTTTACATCCAAGACGGGGATAAAATCTCGTTTACGTTTGATGAGATAAAGTTTCTTCCTCCTCCTTGGCTGGGGGACGGCATGATTTCAGGGGTTAAGTCGAACGCAAAGCTGTCGATATCTCAAGCGGACACCAGTACTGCCCGTATTACATCGGATATGAAGATCTTTAAACCCCTCGATAAGGGAAGGAGTATTCGTTTAGGATGTCATCCGCCAGAGTGGGCTAAGAACACAAATTATTCTATAGGTGCTTATATCGTTGCGGATGATAAAGTCTACCGAAGTCTTACCACGGGTCGATCGGGGGATCGTTTTGGTTATTCAAAAGGAGCAACGTACGTTAAGGACAATAATATAACTTGGATAACCGTCCTCAATCTTTCTTCTAAAACCTCCCGGGAATCGGCTTCAGGGGCTGTAGATCCGTATTATGTATGGGGGGATATAAAAGACGTTTCGAAAGATGGGCGTTCAATATCCGTAGCTCCTCAGTCGCAGACCCTTTTTCAAGCAGGAGTCTCTGTTGTTTCGTGGTTTATGAGTGCGTGGGGCGAGCAAGAGGGTTATCCGTCACATGTAACGTTTCATAATAATCGATTGCTGTTCTCTGGCAGTAAGGGCGATGAACTTTCGGTTTATTTATCGAGTTTTGGGGCTTTTTACGATTTTTCTCTTGATGGGGAATACGGGTGTTACGATCCTACGAAAGCGTTAACGACAGCGGTTACGGACTTTTCTGCGAGCACCATTCATTGGATGCATCCGTTCGGGGAAGGGGTGTTGGTTGGGTGTGATACATCTTTATGGCTTTTGTCCATCAGCCTTTCTAAGGGATTATCTATTGATTTTCGACGGGTATCGGGATCAGGAGTGTACGCTTGTCCTCCTGTGAGCGTTGGTGATTGTCTGGTCTTTGTTTGTGGGGTGGGGCGACGGATTAAATATATATCAGGGAGCACCGAACAAGGGTTTCGATTCAATGAAATAACGCAACTCGCTGATCATTTGTTCAATCAGCGTATACTGCAGTTGGTGTATCAAGAAGAGCCGCATTCGATCGTTTGGGTGGTGCTGGAACCTAAGGATAACTCTTTTCCTCGCTTGCTAGGTTGCCGATTTTCGGCTGAGGGGGAAGGGGATTTTGCGTGGCATACCCACATGATTAGCGATAAACATTATGTTTTATCCGCCGCCTCTTTTCCGAATGATAATCGTGGGGGAACATCACTTTGGATGTTGGTCGCACTGTCGGCTGGCGAGGAACGTTCCTTCACCGTTCGTTTGAAGCTATTGGATGATTTTAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e87b700dcc7001663b6aadd034830eacdce7787e911d13b8dd6feac4e8b225e0
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8467
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Two 'Candidatus Liberibacter asiaticus' recently found in California harbor different prophages Zheng,Z., Wu,F., Deng,X. and Chen,J. 2017-06 — GenBank