Protein

View in Explore
Genbank accession
YP_009785955.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,89
Protein sequence
MANKLINMAIQTTNWAIGLLKTGSAAEARTYLGVGGGGGGGAVDSVNGQTGEVTLDAADVGAAPAGAPLSSFANDVGFITDADIPGSPVISVNNKSGVVVLSASDVGAATAAQGNKADTALQPGDIPTQSVTSVNSKTGAVTLSASDVGAATTAQGTKADNALQSVPSRLDGSRGYNTDPHPDELISICANGLGNPKPALEVWADDGVTQANISVTTYGVNGGGIMHSRMANGTRAAPTAVTAEQIYGGYGARPYHTGGDFFASSPVSIHWVAKELQQPNSKGGALRILTTPIGGNNRKVNTSFAPDGDLIVSESLLDRNPYPALSGRGLAVVRSGAIPAVAHTMQFGGGGNPVSGFSASCAQGTAEAPLATIQNQSAYFGFFGHNGTSFTSSAGLTSFRATANWTPSSTPCRWSVELTAPGSVARREVLAVAAEGFMYVANAQSVPTGSVGSGGYLYVEGGALKFRGGNGTVTTIAPA
Physico‐chemical
properties
protein length:479 AA
molecular weight: 47982,60770 Da
isoelectric point:5,69438
aromaticity:0,06263
hydropathy:-0,03111

Domains

Domains [InterPro]
DC_1519
ATT
3–90
DC_1519 DC_1073
YP_009785955.1
1 479
Architecture
ATT
STR
ATT 3-90 | STR 110-455 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage XAJ24
[NCBI] 		1775250 Uroviricota > Caudoviricetes > Autographivirales > Gujervirinae > Pradovirus
Host Xanthomonas arboricola pv. juglandis
[NCBI] 		195709 Pseudomonadota > Gammaproteobacteria > Lysobacterales > Lysobacteraceae > Xanthomonas > Xanthomonas arboricola

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009785955.1 [NCBI]
Genbank nucleotide accession
NC_047762.1 [NCBI]
CDS location
range 41567 -> 43006
strand +
CDS
GTGGCGAATAAGCTAATCAACATGGCAATCCAGACTACCAACTGGGCAATCGGATTGCTGAAGACTGGAAGTGCAGCAGAAGCTCGCACTTACCTGGGCGTAGGTGGAGGTGGCGGTGGTGGCGCTGTGGATTCTGTCAACGGACAGACCGGTGAAGTCACTCTCGATGCAGCCGATGTCGGTGCCGCGCCTGCGGGCGCTCCGCTGTCCTCGTTCGCAAACGACGTTGGCTTCATCACCGACGCAGACATACCTGGGTCGCCAGTTATCTCGGTCAACAACAAGAGTGGCGTAGTGGTGCTATCCGCTTCCGATGTTGGCGCTGCCACAGCTGCTCAGGGTAACAAGGCGGATACAGCCTTGCAGCCTGGGGATATTCCTACGCAGTCCGTTACTAGCGTCAATTCCAAGACTGGCGCAGTCACCCTCAGCGCAAGTGACGTTGGCGCAGCAACTACAGCACAGGGTACTAAAGCCGATAATGCGTTGCAGTCCGTGCCATCTCGCTTGGACGGGTCTCGCGGGTACAACACCGACCCTCATCCTGATGAGCTTATAAGCATCTGCGCTAACGGCCTGGGTAACCCCAAGCCTGCTCTTGAAGTCTGGGCAGACGACGGGGTGACACAGGCTAATATCAGCGTGACAACGTATGGAGTTAATGGTGGCGGCATAATGCACTCCCGCATGGCTAACGGGACACGCGCCGCGCCTACTGCAGTTACTGCTGAGCAAATCTACGGTGGGTACGGTGCCCGTCCTTACCATACCGGAGGAGACTTCTTCGCAAGCAGCCCAGTTTCCATCCATTGGGTCGCAAAGGAACTGCAACAGCCTAACAGTAAGGGTGGCGCGCTTCGTATTCTTACCACACCCATCGGCGGTAATAACAGAAAGGTCAATACATCCTTCGCACCTGATGGGGACCTTATCGTATCGGAGTCACTCCTTGACCGTAATCCGTACCCCGCTCTCTCTGGGCGTGGGTTGGCTGTAGTTAGATCGGGTGCAATCCCAGCAGTAGCACACACAATGCAATTCGGCGGCGGCGGTAACCCGGTGAGCGGGTTTTCCGCATCATGCGCGCAGGGTACGGCTGAGGCCCCACTCGCCACAATTCAGAACCAGTCTGCCTACTTTGGGTTCTTTGGTCACAACGGTACGTCTTTCACTTCATCCGCAGGTCTAACTTCGTTCCGCGCAACAGCCAACTGGACTCCATCATCCACCCCGTGCCGATGGAGTGTGGAGCTTACGGCACCAGGCTCAGTAGCGCGCCGTGAGGTTCTTGCGGTGGCCGCCGAGGGCTTTATGTATGTTGCAAACGCGCAGTCTGTCCCTACTGGGAGTGTTGGCTCGGGCGGATACTTGTACGTAGAGGGAGGGGCCTTGAAGTTCCGGGGTGGTAATGGAACAGTAACAACCATCGCACCAGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6213e9207160ae52550fc10d157f596179708ad3d4c6ee6ac323a6df794376fb
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6810
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophages of Xanthomonas arboricola pv. juglandis: Characterization of two phages Domotor,D., Frank,T., Rakhely,G., Doffkay,Z., Schneider,G. and Kovacs,T. 2018-01-02 — GenBank