Protein

View in Explore
Genbank accession
AYD87671.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,82
Protein sequence
MAAMSLYSMTRKPKAAAGSPSPIAFKADPNAYIPFVAGGPVATGGNIVHLRATGAKHKYLVYLTALSHGGPIHSYGDFTADDSVVTFGADQGEGATGTYLNRMWQRFAVGLMAGTALALTSVGSKDTPGDHGGHPAEWTGTHRLCGIAHTMLCLEADPAKYPAIPKPLWVVRGGPVYDPRKDSTVPGGSGPQRASDRTTWSTDGNQNPFLQALTFAIGHVYNGIRVGGVGMPVKGIDVQAFVYGANVADANNWKIAWVWNTGMRKWDVLATMLQAGAGQPLVRAGMLSCSVEAPRVSLDTITEADLRGDFSVTGSANTRTRKNTLIPRCKSPNHKWAVVPFGEVTGAVYVAEDGGVRRPMEVEYEAVSADDGGVQVRQLAAYDLTNLREGLVATIPCSARFLKYRAGDCLTVNAPSTLMNGQKVVVQKREFDVERRIMLLTVRSETDGKHAYALGQTDAPPPSPTLTGNDGLVIEAPDPDAWTVTPGTSTGTGPVIPTIVVTPTDPTGAHYDDPAATHVVVRYRIYGLNSDTGQPYPWVYEEYPATASRIELKGAAPGTVYEVQIAYRVRGIVGDFRSYGNVTTGDLIATSTLFLGVGPDKRPALDVIRETSALGEAALANVVNIVKNRGWAEALLFLEGKSLGTIVLDEIRPFIEGATIELQHLSLLGVASPDGSSFILDIDTVRISPTETFAQRLSNIGGRLGGAELDILHQSTLIYDLQTGKANVSDLTFLSLQVSGQSANITQLFNITYAQGQIIDASATLAINVNNQITGYKVNGVTREFDILASVFRVWDGVSAVPMFAVDGSGAYVAGSKVRTDSLQNNAVTVPDIQVASWTMGGTGGEQLILAGGVSMARAGFVRASASVAQHFPSGDRNWSFRLEIAGQNAYQCYGANGQDSVPLSGAVYVGAGYTPVYLWWNGQSSVNIDYRALEVLGVMK
Physico‐chemical
properties
protein length:941 AA
molecular weight: 100038,88170 Da
isoelectric point:5,93680
aromaticity:0,08183
hydropathy:-0,04644

Domains

Domains [InterPro]
DC_0187
STR
1–874
DC_0187
AYD87671.1
1 941
Architecture
STR
STR 1-874 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AYD87671.1
1 941
Domain Start End Length (AA) Confidence
N-terminal 1 82 82 0,8151
Central domain 83 281 200 0,0800
C-terminal 282 941 659 0,1786
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-82
Central
83-281
C-terminal
282-941

Taxonomy

  Name Taxonomy ID Lineage
Phage Caulobacter phage Kronos
[NCBI] 		2340873 Uroviricota > Caudoviricetes > Caudoviricetes incertae sedis > Kronosvirus pelion >
Host Caulobacter sp.
[NCBI] 		78 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Caulobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AYD87671.1 [NCBI]
Genbank nucleotide accession
MH884648.1 [NCBI]
CDS location
range 15496 -> 18321
strand +
CDS
ATGGCCGCCATGTCGCTGTACAGCATGACGCGCAAGCCGAAGGCGGCGGCGGGGTCGCCCTCGCCTATCGCCTTCAAGGCGGACCCGAACGCCTACATTCCGTTTGTGGCGGGCGGCCCGGTGGCGACCGGCGGCAACATCGTTCACCTGCGGGCGACGGGGGCGAAGCACAAGTATCTGGTCTATCTGACGGCCCTGTCTCACGGCGGCCCCATCCACAGCTATGGGGACTTCACGGCAGACGATAGCGTGGTGACCTTCGGCGCGGACCAAGGGGAGGGCGCGACCGGAACCTATCTGAACCGCATGTGGCAGCGGTTCGCCGTGGGTCTGATGGCGGGCACCGCCCTGGCCCTGACGTCGGTGGGCAGCAAGGACACGCCCGGCGACCACGGCGGACACCCGGCGGAATGGACCGGCACCCATCGGCTGTGCGGGATCGCGCACACCATGCTGTGCCTGGAGGCCGACCCCGCTAAGTATCCGGCAATTCCCAAGCCCCTGTGGGTGGTGCGTGGCGGCCCGGTCTATGATCCTCGCAAGGACAGCACGGTGCCCGGCGGCAGCGGCCCGCAGCGCGCCAGCGACCGCACCACGTGGTCCACGGATGGAAACCAGAACCCCTTCCTTCAGGCGCTGACCTTCGCAATCGGCCACGTCTACAACGGAATTCGCGTCGGCGGCGTGGGCATGCCGGTGAAGGGGATCGACGTACAGGCGTTCGTCTACGGCGCGAACGTCGCGGACGCGAACAATTGGAAAATCGCATGGGTGTGGAACACCGGCATGCGAAAGTGGGACGTCCTGGCAACCATGCTTCAGGCTGGCGCAGGCCAGCCGCTGGTGCGGGCGGGCATGCTGTCCTGTTCCGTCGAGGCCCCGCGCGTCTCCCTGGACACCATCACGGAAGCCGACTTGCGCGGCGACTTCAGCGTGACCGGCTCCGCCAACACGCGCACCCGGAAAAACACCCTCATTCCCCGGTGCAAGTCGCCGAACCACAAATGGGCGGTGGTCCCCTTCGGCGAGGTTACCGGCGCGGTCTACGTGGCCGAAGACGGCGGGGTGCGCCGCCCCATGGAAGTGGAATATGAGGCCGTTTCTGCGGATGACGGCGGGGTGCAGGTGCGCCAGCTGGCTGCCTACGACCTGACCAACTTGCGGGAAGGCCTTGTGGCCACTATCCCGTGTTCCGCCCGCTTCCTGAAGTATCGCGCGGGCGACTGCCTGACCGTCAATGCGCCGTCCACGCTCATGAACGGCCAGAAGGTGGTGGTTCAAAAGCGCGAATTCGACGTTGAACGCCGGATCATGCTTTTGACGGTCCGCAGCGAGACGGACGGGAAGCACGCCTATGCGCTTGGGCAGACCGACGCGCCGCCGCCCTCGCCGACCCTGACCGGTAACGACGGGCTTGTGATCGAAGCGCCGGACCCGGACGCCTGGACGGTCACGCCGGGCACCTCCACGGGCACCGGCCCGGTAATCCCCACCATCGTGGTGACGCCCACCGATCCGACCGGCGCGCATTATGATGACCCGGCCGCCACGCACGTGGTGGTCCGATATCGCATCTATGGGCTGAACTCGGACACCGGCCAGCCTTACCCGTGGGTGTACGAGGAATACCCGGCCACGGCCTCGCGCATCGAACTGAAGGGCGCGGCCCCTGGCACCGTGTATGAGGTGCAAATTGCGTACCGGGTGCGCGGCATCGTCGGCGATTTCCGCAGCTATGGGAATGTGACGACGGGCGACCTTATCGCCACGTCGACTCTGTTCCTGGGCGTCGGCCCGGACAAGCGCCCGGCCTTGGACGTGATCCGCGAAACCTCGGCGCTGGGGGAAGCCGCCCTGGCGAACGTGGTCAACATCGTCAAGAACCGGGGTTGGGCGGAAGCCCTGCTGTTCCTTGAGGGCAAGTCGCTTGGGACGATCGTTCTGGACGAAATCCGCCCGTTCATTGAAGGGGCCACGATCGAACTTCAGCACCTGTCTCTGTTGGGCGTCGCCAGCCCAGACGGATCGTCGTTCATTCTCGATATCGACACGGTGCGCATCAGCCCCACCGAAACCTTCGCCCAGCGCCTTAGCAATATCGGCGGGCGGCTGGGCGGCGCTGAACTGGACATTCTGCACCAATCGACGCTGATTTATGACCTTCAGACCGGTAAGGCAAATGTCTCTGACCTGACGTTCCTAAGTCTACAGGTGAGCGGACAGAGTGCGAATATTACGCAACTGTTCAACATTACTTATGCACAGGGCCAGATTATTGATGCGTCGGCCACCCTGGCCATCAACGTCAACAATCAAATCACGGGCTACAAGGTAAACGGCGTCACGCGAGAGTTCGATATTCTCGCGTCGGTGTTCCGGGTTTGGGACGGCGTGTCGGCTGTCCCCATGTTCGCGGTGGACGGATCAGGCGCTTATGTGGCCGGGTCCAAGGTTCGCACGGACAGCCTGCAAAACAACGCGGTGACGGTGCCGGACATTCAGGTGGCTAGCTGGACCATGGGCGGGACCGGCGGCGAGCAACTGATTTTGGCGGGCGGCGTGAGCATGGCCCGCGCCGGGTTCGTGCGCGCTTCCGCGTCCGTGGCCCAGCACTTCCCGTCCGGCGACCGTAATTGGTCCTTCCGTCTCGAAATCGCGGGGCAGAACGCATATCAGTGCTACGGGGCCAACGGCCAGGACTCGGTCCCGCTGTCCGGCGCGGTCTATGTCGGCGCGGGCTACACGCCTGTTTACCTGTGGTGGAACGGCCAATCATCGGTGAACATCGACTATCGGGCGCTTGAAGTACTGGGGGTGATGAAGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
fabb35bc72f6e09ec0b3577a219d79f6c27968a296056b34a1fce065047c0539
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7461
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The isolation and characterization of a novel rhizosphere caulophage that is similar to lambdoid phages Berrios,L. and Ely,B. 2019-02-27 — GenBank